Sorghum bicolor (sorghum): 8072557
Help
Entry
8072557 CDS
T01086
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
8072557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbi04121
]
8072557
Enzymes [BR:
sbi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
8072557
Ubiquitin system [BR:
sbi04121
]
Ubiquitin ligases (E3)
HECT type E3
8072557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
HEAT_EZ
Arm
Adaptin_N
TrAA12
Htt_N-HEAT_1
Motif
Other DBs
NCBI-GeneID:
8072557
NCBI-ProteinID:
XP_021303097
LinkDB
All DBs
Position
9:complement(52261419..52270115)
Genome browser
AA seq
1539 aa
AA seq
DB search
MDRCRKRPDSDPEGCSEPEPPADKRPCTAEPSTSAAAAAAPPPGARQAEQGGSDMDTSSS
GHPGDADVDADDGDGDGDGDGDGDGDGDGGSSCESDGDGSPRPRGSGGGRFQRMVDAVAD
EGAGQDAVVAALMELCEALSFCAEDAGGYFPTEAAARALVRRAGGDGTGATPDVILLSVR
AITYLCDAMPRAGDAVVRHGLLPVLCSRLLAIEYLDVAEQCLQAFEKISRRQPTQCLQAG
MINAVLAYIDFFAASIQRVAVSAVANACKKVPTDCSHFVLDSVPALCNLLQSEDKMIVEK
VAACLISIVDSFSTSVDLVDQLCHQGVIEKVLPLIHTGGLTALSPSTCSNLIGLLAKLAC
TSLVAVKSLFELGVSSTIKGILITSDISHGMPYLPLEKQNNQVNEALKLANQLIPSAARD
VEDTQIILAKEKIITDEPRFLSQFSRDILPVLIKAVNSGANSYICYGCASIVNNICYFSE
PEILQELLKETNIPGFLAGLLSRKDHHVLTSSLKIIEILMQKLPDAYLGFFIKEGVVNAV
EALLNQEDCSKSTHLPDDMQQPETQPVIRNKTTCFCYAFDARRSEAAEKRTCRIGKDSLF
TFARHVKTTYFTKDVVSSEMGLTEILQKLKTCCAVLNETTDKSSDQCNLHQSEEYLSTIL
NEVMMELHGGETMTTFEFLESGLVKSLSNYLSNGKYLQVENNMNCSSDHFLAVVKRFQSF
ARMSFSRMGQGWGDMLLTLLVSKLQNALTSVDNFPLIMSHNFKPRSSISDIPTRHSTITP
CIRVRFKKDEDETNLSSYDSAVNVEISSSLHTIEEFLWPKVSIDVNSQKAESPPSGTALE
SKYADDDSQERDSTPSQKADSPSEGLACENQNPPVETSPKQGTSSSGQAERNTTILSDCT
IQQKLVFSLNGKELDRSVTLYQSILQDQINVGSDIILDMQFWRSVHDITFRAANPEANIT
AVNPEANDSPRHSSTAMSSINENITGFTWQMLPFFPSMLLGKLPCKLDRSGPSYDILFML
HILEGLNRYSFHLVSDERNRSFAHGRITNLNDLKAEVFSIPQQEFVSAKLTDKLEQQMHD
PLVSKSFCLPLWCTELMSACPFLFSFEARWKYFQLTAFGSLKNHHGHMIDASVNSVAERA
SNHSRKKFKVDRDDILVSAAKMMKSHAKSNALLEVEYKEEVGTGLGPTMEFYTLISHEFQ
KSGLGMWRGELPCESVTDNGHVSEFVVAPNGLFPRPWSASADSASFQEVSKRFHLLGLVV
AKAIKDNRILDIPFSKAFYKLILGQELNIYDIQSLDSELATSLVEFQALACRRKYAESNL
TRDCQIISDLTYRGCRIEDLAIEFALPGYPEYVLSLGSCSDSLNAENLEEYVRHVVDATV
KSGIARQMEAFKSGFNEVFPLKKLQVFSEDELERLLCGEQDTWDFAKLVDHIKFDHGYTS
SSPPVINLLEIIQEFGSLERRAFLQFITGSPRLPPGGLAALNPKFTVVRKHNSNDADDDL
PSVMTCANYLKLPPYSSKEKMREKLLYAITEGQGSFHLS
NT seq
4620 nt
NT seq
+upstream
nt +downstream
nt
atggatcgctgccggaagcggcccgactcagaccccgagggctgcagcgagcccgagccc
cccgccgataagcgcccgtgcacggcggaaccctcgacttccgccgcggccgccgccgct
cctccgcccggcgcgcgccaggctgagcagggcggctcggatatggacacctcgtcgtcc
ggccaccccggcgatgctgatgtcgacgcggatgacggggacggtgatggcgatggcgat
ggggatggggatggggatggagatgggggctcgtcctgcgagtcggatggggacgggagc
ccgaggccgcgtggcagcgggggcgggaggttccagcggatggtggacgcggttgcagac
gagggcgccgggcaggacgcggtggtggcggctctcatggagctctgcgaggcgctgtcg
ttctgcgcggaggacgccggcgggtacttccccacggaggcagccgcgcgggcgctggtg
cggcgggccggcggcgatggcacgggggctaccccggacgtgattctgctgtccgtgcgc
gccatcacgtacctctgcgacgccatgccgcgcgccggggacgccgtcgtccgccacggc
ctcctccccgtgctctgctcccggctgctagccatcgagtacctcgatgtagctgagcag
tgcttgcaagcttttgagaagatatcacggaggcagcctacccagtgcttgcaggcgggc
atgatcaacgctgtgctggcatacattgacttcttcgctgcaagcatccagagggttgca
gtgtcagctgtcgcaaatgcctgcaaaaaggtcccgacagattgctcccactttgttctg
gattcggtcccagctctatgtaatcttctgcaatctgaggacaaaatgatagtggagaag
gttgcagcttgcttgataagcatcgtggactcttttagcacttcagttgatcttgtggac
cagctctgtcaccagggtgttatagagaaggtcctacctttgatacacactggtggactc
acggcccttagcccatcgacatgcagtaacctgattgggcttcttgctaagctagcctgt
acttcacttgtggcagtgaagtctctatttgagctgggtgttagtagcacaataaagggg
attttgatcacttcagacatctcccatggcatgccatacttgcctctggaaaaacaaaat
aatcaggtcaatgaagctctgaaactagcaaaccagttgattccttcagcagcaagggac
gttgaagacacccagatcatactagcaaaagaaaaaataattacagatgaaccaaggttc
ttgtctcaattctctagggatattcttcctgtcttgatcaaggcggtgaactctggtgcc
aattcatacatttgctatggctgtgcttcaatcgttaacaatatttgttacttcagtgaa
ccagaaatacttcaagagttgctcaaggaaacgaacataccgggcttcttggctggttta
ttgtctagaaaggatcatcatgtgctgacctcatcactaaagataattgagattctcatg
caaaagcttcctgatgcataccttggcttctttatcaaggaaggtgttgtcaatgcagtt
gaggcgcttcttaatcaagaggattgctcaaaatccactcatctgcctgatgacatgcaa
caaccagagactcaacctgtcataagaaataagactacatgtttctgctatgcatttgat
gcccgtagatctgaagctgctgaaaaaaggacttgtaggattgggaaggacagtcttttt
acttttgccaggcatgtgaaaacaacctactttactaaggatgtagtgagttctgagatg
gggttaactgagattttgcagaagctcaaaacttgctgtgcagttttgaatgagaccaca
gacaagtcatcagaccaatgcaatcttcatcagagtgaagaatacttatctaccatttta
aatgaggtgatgatggagcttcatgggggagaaacaatgacaacctttgaattccttgag
agtggattggtcaaatctttatcaaattatctctcaaatggcaagtacctccaggtggag
aacaatatgaattgcagttctgaccattttttggctgtcgtgaaaagatttcagtcattt
gctcggatgtctttctcaagaatgggccaaggttggggtgacatgcttttgacactttta
gtaagcaagctgcagaatgctcttacttctgttgacaactttccacttataatgagccac
aacttcaagccaaggagcagtatttctgatatccctacgaggcactcaacaattactcca
tgtatccgagtaagattcaagaaagacgaagatgaaactaacttgtcaagctatgatagt
gctgtgaatgtggaaatatcgtcatcgttgcataccatcgaagaatttttgtggcccaaa
gttagtatagatgtcaatagtcagaaggctgaatcaccacctagtggtactgctttggaa
agcaaatatgctgatgatgactctcaggaacgagattccacacctagtcagaaggctgat
tcaccatcagagggcctggcttgtgaaaatcagaatccgcctgtagaaacaagtccaaag
caaggaacttcatcttctggtcaagcagaaagaaacacaacaatcttgagtgattgcacc
atacaacagaaattggtatttagcttaaatggtaaagagcttgaccggtctgttactctg
tatcagtcaatactgcaggatcagatcaacgtagggtctgacataattctggacatgcag
ttttggcgcagtgttcatgacataactttcagagctgctaacccagaagcaaatataaca
gctgttaacccagaagcaaatgattctcctagacattcctctactgcaatgtcatcaata
aatgagaacataactgggtttacatggcagatgctccctttctttcctagtatgttgctt
ggtaaacttccttgcaaactcgacagatcaggtccttcgtatgacatattgtttatgtta
cacattttagagggattaaacaggtattcttttcacctcgtgtctgatgagagaaaccgt
tcttttgcccatggaaggataactaacctcaatgatctgaaagctgaagttttctcgatt
cctcagcaagagtttgtcagtgccaaattgacagataaattggagcaacaaatgcatgat
ccattagtttcaaaatctttctgcctgcctttatggtgcaccgaactgatgtctgcctgc
cctttcttattttcatttgaggcgagatggaagtatttccagctgacagcatttggttct
ttgaaaaatcatcatggccatatgatagatgcaagtgttaacagtgtcgcagaaagggcg
tctaaccactcacggaaaaagttcaaagttgatcgcgatgatatactggtttcagctgca
aaaatgatgaaatcgcatgctaagagcaatgctctactcgaagtagaatataaagaggaa
gtgggcactggtttaggtcctacaatggaattctatacattgataagtcatgaatttcag
aagtctggtctaggcatgtggagaggggagcttccttgtgaatctgttaccgataatggt
catgtttctgaattcgtggttgcccctaatggacttttccctagaccttggtctgcttct
gcagattctgcttcctttcaagaagtgagcaagagattccacttgcttggtctggttgtt
gcaaaagcaattaaagacaacagaattcttgacattccattttctaaagcattctacaag
cttatccttgggcaggagcttaatatatatgatatccagtcattggattctgaactggcc
acatcccttgtggagtttcaagctcttgcttgtcggagaaaatatgcagagtcaaatttg
acaagggactgccagattatatcagatttgacttatcgaggttgtagaattgaggatctt
gctattgagtttgctctcccagggtatccagaatatgtgctctcactgggaagttgctct
gacagtttgaatgctgagaatttggaagaatatgttcgtcatgttgttgacgcaacggtt
aaaagtggaattgcaagacagatggaggcttttaagtcaggatttaatgaggtatttcca
ctaaaaaaactccaggttttctcagaggatgagctagagagattactctgtggtgaacaa
gatacatgggattttgcgaaacttgtggatcatatcaaatttgatcatggttacacttcc
agcagccctcctgtcatcaatttgttggaaatcatacaagagtttggatcccttgagcgc
agagctttcttgcaatttataacgggttcacctcggcttccaccaggcgggttggctgca
ctaaatccgaagttcacagttgtccgaaagcataacagcaatgacgctgacgatgacctg
cctagcgtgatgacttgtgcgaactatcttaagttacctccgtattcttcaaaggagaag
atgagggagaaactcctctatgcaattacagagggccaggggtccttccacctatcttaa
DBGET
integrated database retrieval system
