Sorghum bicolor (sorghum): 8073102
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Entry
8073102 CDS
T01086
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8073102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8073102
03041 Spliceosome [BR:
sbi03041
]
8073102
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
8073102
Spliceosome [BR:
sbi03041
]
Complex B
Other components
Prp19-related factors
8073102
Complex C
8073102
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_2
TPR_12
PPR
ARM_TT21
TPR_15
UTP6_C
ARM_TT21_C
TPR_5
Motif
Other DBs
NCBI-GeneID:
8073102
NCBI-ProteinID:
XP_002463280
UniProt:
C5X3Z7
A0A921RT89
LinkDB
All DBs
Position
2:complement(74791456..74796755)
Genome browser
AA seq
932 aa
AA seq
DB search
MPSASGPVAVASASAAAKAAPSPAIGISPDLYPTEDDLPYEEEILREPFKLKGWWRYLVA
RASAPFAKRAVIYERALKALPGSYKLWHAYLRDRLDHARPHPIDHPAYSSLNNTFERALA
TMHKMPRVWVLYLTSLLDQRLLTRARRSFDRALRALPVTQHDRIWPLYLRLASLPACPVE
TSLRVFRRYLQFDPSHAEDFINFLISANHWQEAANRLASVLNDDGFRSVKGKTRHQLWLE
LCEILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRGLFEKARDVFEEGI
SSVVTVKEFSVVFEAYTQFEQSMLAAKLEAAEEEGAEDENEGGGRKSGMDKLSKKFLDEF
WLNDEDDTDLRMARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFEKDPARQVATYV
EAVKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKRATQVNYKAVDHLASIWCEW
AEMELRHNNFDKAIELMRQATAEPSVEVKRRAAAEGDEPVQMKVHKSLKMWSFYVDLEES
LGTLDSTRAVYERILDLRIATPQIILNYAYLLEEHKYFEDAFKVYERGVKIFKYPHVKAI
WVTYLTKFVQRYKRSKLERARELFHEAVQQAPPEEKKPLYLQWAKLEEDYGLAKRAMNVY
DEAVRAVPNSEKMAMYEIYIARAAELFGVPRTRQIYEQAIESGLPDRDVLTMCMKFAELE
RNLGEIDRSRAIYVHASNYADPNNPDFWKKWNDFEIQHGNEDTFREMLRIKRTVAASRSQ
THFILPEYLMQRDQRLNLDEAVDTLKRAGVPEDEMAALERQLAPGPSTAPPAAPSTAPAS
ANRMMNFVSAGVEAQAESSRQQAGNNEDIELPDESDDEEPDVQIAEKSVPAAVFGELGKR
AAENAAENNEESSGAQGNEQLGALERIKRRRQ
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcagcgtcgggtccggtggccgtggcgtcagcgtcggcggcggcgaaggccgcg
ccgtccccggccatcgggatctcgccggacctgtacccgacggaggacgacctgccctac
gaggaggagatcctgcgggagcctttcaagctcaaggggtggtggcgctacctcgtggct
cgcgcctccgctccgttcgccaagcgcgccgtcatctacgagcgcgcgctcaaggcgctc
cccgggagctacaagctctggcacgcctacctccgcgaccgcctcgaccacgcgcgcccg
caccccatcgaccacccggcctactcctccctcaacaacaccttcgagcgggcgctggcc
accatgcacaagatgccgcgtgtctgggtcctctacctcacctcactgctcgaccagcgc
ctgctcacgcgcgcgcgccgctccttcgaccgtgccctccgcgcgctccccgtcacgcag
cacgaccgcatctggccgctgtacctccgcctcgcctcgctcccggcctgccccgtcgag
acgtcgctccgagtcttccgccgatacctccaattcgacccctcccacgccgaggacttc
atcaacttccttatatccgccaaccactggcaggaggctgccaaccgtctagcatccgtg
ctcaacgacgatgggttccgctccgtcaaggggaaaacaaggcaccagctctggctcgag
ctctgcgagatcctcaccaagcatgccgatgaggttgccggcctcaaggtggacgccatc
ctgcgtggcgggatacgcaagttcaccgatgaggtcggcaagctttggacctcactggct
gattactatgtcaggagaggccttttcgaaaaagctagggatgtatttgaggagggcatt
tcttcagtggttaccgtcaaggagttcagcgtggtgtttgaggcatatacacagtttgag
cagagtatgcttgcggcaaagctggaggctgctgaggaagaaggggctgaggatgagaac
gagggagggggcagaaagagtgggatggataagttatcaaagaaattcctcgatgaattc
tggttgaacgatgaggatgatactgatttgaggatggcaaggtttgagcggctgttggat
cgcagaccagagcttcttagcagcgtgctgttgcgacagaatccacacaatgtggaggag
tggcacaggagggtgaaactctttgaaaaggatcctgcaaggcaagtagcgacatatgtt
gaggccgtgaaaactgtagacccaatgaaggcagttgggaagccccatactctatgggtg
gcatttgccaagatgtatgagaaacacaatcgtctagatagtgctgaagatattttcaaa
cgggctactcaagtgaattataaggcagttgaccacttagccagtatctggtgtgagtgg
gcagagatggagctgcgccacaacaattttgacaaggctattgagctgatgaggcaggca
acggcagagccctctgttgaggttaagaggcgggctgctgctgagggggacgagcctgtc
caaatgaaagtgcacaaatctttgaaaatgtggagcttttatgttgatctggaggagagc
cttggaaccttagactctacccgtgcagtttatgagagaatattggatttacgaattgcc
actccacagataattctcaactatgcatatcttcttgaggagcacaagtatttcgaagat
gcatttaaagtgtatgaaaggggtgtgaaaatattcaagtatccccacgttaaggccatt
tgggtgacctaccttacaaagtttgtacagagatacaagagaagcaagttagaacgagca
agagagcttttccatgaagctgtccaacaggctcctccagaggaaaagaagcccctatat
ttacaatgggcaaaactggaggaagactatggtcttgccaaacgtgctatgaatgtatat
gatgaagctgtaagagctgttcctaacagtgaaaaaatggctatgtatgaaatctatata
gcacgtgctgccgaactcttcggtgttccaaggacaagacaaatatatgagcaagcaatt
gaatcaggcctcccagacagagatgttctgacaatgtgcatgaaattcgctgagttagag
agaaaccttggggaaattgatcgttcgcgtgccatctatgtgcatgcatccaactatgct
gatccaaacaatcctgacttttggaagaagtggaatgattttgagattcagcacggtaac
gaagacacattcagggagatgcttcgtatcaagcgtacagtggctgctagccgcagtcag
acacatttcatactaccggagtacttgatgcagagggatcagaggttaaatctggacgaa
gcagttgacactcttaagcgtgctggcgtccctgaagatgagatggcagccttggaaagg
caactggctccgggaccatccactgcaccaccagcagcaccaagcactgccccagcgtct
gctaacaggatgatgaacttcgtcagtgctggagtagaagcgcaggccgagagcagcaga
caacaggctggtaacaatgaggacattgagctgcccgacgagagtgacgacgaggaacct
gatgtccaaattgcggaaaagagtgttcctgctgcggtatttggtgagcttggcaagaga
gctgctgagaatgctgccgagaataatgaggaaagctcaggtgcccaagggaatgagcag
ctgggcgcccttgagaggataaagagacgacgacaatag
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