Sorghum bicolor (sorghum): 8074468
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Entry
8074468 CDS
T01086
Name
(RefSeq) nuclear pore complex protein NUP214 isoform X1
KO
K14317
nuclear pore complex protein Nup214
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
8074468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8074468
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
8074468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TACC_C
GIT_CC
Motif
Other DBs
NCBI-GeneID:
8074468
NCBI-ProteinID:
XP_021308151
LinkDB
All DBs
Position
2:complement(76948304..76959858)
Genome browser
AA seq
1762 aa
AA seq
DB search
MGAPRELELSDEVEGEEEGTTDFVFRLAGDPIPLLPTDSNPLPLFDLLSPPARPLAVSDR
HATVFLAHPSGFIVVRTKELIEASKEAREKGKASTRCAQDCCVADVPLPGVSLIALSHDE
SVLAACTDTEIQFFSLASLLTHKDVVPSSSCSLGRAGTVKDFKWLNHASAAYIVLSNGGL
LCHGSLGEGLKDVMENVDAVDCCKEGNHIAVARGNKLTILSPDFKETCSMSLLFQLWSDE
SDSEGTTIKVDSIGWVHGDSIVIGSVRLNEDDNEEGYLVQVIRTEESTFCESPGKPDVYT
YVDFFHGIMDDILPSGVGPNLLLGYLHRWDLMVASNKKSIDDHIALLKWPSAHDDEKTVT
YLEMLEDKYSPRIDLQENGDDNVILGFGVENVSLFQKITVTVGPEQREVAPQHILLCLTG
EGKLAVYYLARISDPSDLPHATVSTNEDYGEKHISPAAVPGKKLTPSVTGSVSKSTLTEH
GAEASIAQTGSNQHESMNVKNSSSASKEQETTGNSLLISSNKKPIVDTKQLNVTAPPAAL
PSLELTGNTKPTISSSFSTVNNEGMNPTGGNAPNGLAPSLQPSSRSFGNSQTGKEGLDSA
QSVGIFGGSQNSNKDGDVYGFKSSGFTSSGSVPAKIGERNEVGFGVPSPQTSYTIDRKVF
GAPVALSSVPSPSISPAKSAPVGSSIGFRTGNSEAPQSLRGSPPSQQSMGKSYNSRTQTP
ADYSRNSKMGTRFDSEQDLSKKFYSINEMTKELDALLAYIEKDGGFRDACITFQQRPLSM
FEDSLQNFLELLQVFKGKVEEQCSKVEDLRNKMFQVSARQTYMKGIVSQSSDNQYWDIWN
RQKLSPEFEVKRQNILKANQNLTNQLVELERHFNNLEMNRSSETGRVASNRRAVYSNKTR
SSQTQLSSVYNALNSQLAAAEQLSECLSKQISVLNIGSPTRKQGTVTKELFESIGLAHTT
DATKFSGSTPKPVKRFPSVNEHSKGILGPSKSGEPETARRRRESLDMSLASLEPQKTTVK
RIAQQQRLKISSDLPFRSNKKIFDSQMAAISQEKSSDSSNSSIVESYVSRLHSLSEVSDV
KEKPSEPQQNPLFKWIKESTGSSQISEQKHIELPGQMKSTAHSSKLTPSSPPSFSYTRMG
AQDSINPSSVPSFGTKHTVSKPNTLTFKTTITPKSNASTEPNILPSITASKTSQSPLSVK
TTGESGDLPTLTMKNRQDSQSMKSLGNIKGPGASLQNKGGIFRDLGKSSFTSEHSKPAVL
HEKTGQLSGVGDAVQNTVKDTPKMAPQPSAFSSAPVTQTDSYSLRSTVYSSATSASSGAK
TSEVLSSSVQKVSPIVARGTVSSSIPTPAKDSSTGLSQNASKPEMLISEVTSTILSASST
SVISTTESKPSVPPTTGASLPSAHVSVPKTAPTTSESVVTSTGKDGGPNTDTIAADEDDM
EEEAPSASAELNFGALGGFSLGSQPSSSPQKSNPFGASFGTSDNKSSGTPFTLTTSPGQL
FRPASLSIPSAQPAQQPSQSTSSSSFSSTFSSGLTGFGQPAQIGSGQQSAFGKPAQIGAG
QQAGFGQAAQIQSGFGQPAQIQSGFGQSAQIGSGQQSGFGQPAQIGAVQSGFGQPAQFGA
QQALGSVLGSFGQSRQLGGVGSGGFGGFASASTSGGFGSLSSSNAGFAGAATVGGFSAPA
ASAGGGFAAATGGGFAALASKSGGFAGAASSGGGFAGAAQGGGFGSGGGFGSFGGNQGAG
FSAFGASGTGRPPADFLTQMRK
NT seq
5289 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgccgcgcgagctcgagctctccgacgaggtggagggcgaggaggaaggcacc
accgacttcgtcttccgcctcgctggcgaccccatcccgctcctcccgactgactccaac
ccactcccgctcttcgacctgctgtcccctcccgctcgcccgctcgccgtctccgaccgc
cacgccaccgtcttcctcgcccaccccagcgggtttatagttgtgaggacgaaggagttg
atcgaagccagcaaggaggcgcgcgagaagggaaaggcgagcacccgctgcgcgcaggac
tgctgcgtcgccgacgtgcccctccctggtgtatccctcatcgcgctctcccatgatgag
tccgtgttagcagcctgcacggatacagagatccagttcttctctttggcgtctctgctc
acacataaggatgtggtaccatcgtcatcatgtagcttgggacgagctggcactgtgaaa
gatttcaagtggttaaatcatgcctctgcagcatatattgtactctcaaatggtggtttg
ctgtgtcatgggagtttgggtgaaggcctgaaggatgtgatggaaaatgtcgatgcagtt
gattgttgcaaggaaggaaatcatattgctgttgcaagagggaacaaacttaccatatta
tcaccagattttaaggaaacatgctccatgtccctcttgttccagttgtggtctgatgaa
agtgattcagagggcactaccatcaaagtggattccattggctgggtacatggtgatagt
attgttattgggtctgttcgattgaatgaagatgacaatgaagaaggctatcttgttcaa
gttataaggactgaagaaagcacattttgtgagagcccaggcaagccagatgtttatacc
tatgtcgattttttccacggcattatggatgatattttaccatctggagttggacctaat
ctgcttttgggttatctgcatcgctgggatctcatggtggcttccaataaaaagagcatt
gatgaccacattgcccttctgaagtggccatctgcccatgatgatgaaaaaactgtaaca
tatcttgaaatgttggaggataaatacagtcctaggattgacttgcaagagaatggcgat
gacaacgtcatactagggtttggtgttgagaatgtttcattatttcaaaagatcactgta
acagttggacctgaacaaagggaggttgcccctcaacatattctactctgtttgactggt
gaaggcaaactagctgtgtattacctcgccaggatttcggacccttctgatttacctcat
gctactgtgtctaccaatgaggactacggtgaaaaacatatttcacctgcagctgtacct
ggaaagaagttgactccaagtgttacaggctcggtatctaagagtactctcactgaacat
ggtgctgaggcctctattgcacaaacaggtagcaatcagcatgaatcaatgaatgtgaaa
aatagtagctcagcttcaaaagaacaggaaacaactggcaattcgttgcttatctcttcc
aataagaagcccatagtagacaccaagcaactgaatgtgactgctccacctgcagccttg
cctagcttagaattaacaggaaacacaaaacctacaatatcttccagcttttctactgtc
aataatgaaggcatgaatccaacaggaggcaatgcacctaatggattagctccttccttg
caaccaagcagcagaagttttggaaacagccaaactggtaaagaaggcctggattcagct
caatcagtgggaatatttggtggatctcaaaactccaataaagatggcgatgtctatggt
ttcaagtcttcagggttcacctctagtggatctgtccctgccaagatcggagaaaggaac
gaggttggttttggagttccttcaccgcaaaccagctacaccattgatagaaaagttttt
ggtgctccagttgccttaagttctgtaccttcaccatcgatatctccagctaaatctgcc
ccagttggatcttcaattggatttcggacaggaaactcagaagctcctcaatcattgcgt
ggatcacctccgtcacagcaatctatgggcaaatcatataacagcaggacacaaacacca
gcagactattctagaaactccaaaatgggcacaagatttgattctgaacaagacttatct
aaaaagttttatagtataaatgaaatgacgaaggagttagatgcgctactagcatacata
gaaaaggatggtggttttagagatgcctgcataaccttccagcagcgtcctctttctatg
tttgaggatagcttgcaaaactttttggagttgttgcaggtcttcaagggcaaagtagag
gaacaatgttcaaaagttgaagatctgaggaacaagatgtttcaagtttctgctaggcaa
acttacatgaaaggaattgttagccagtcttcagataatcagtactgggatatatggaac
cgtcagaaattgagtccagaattcgaagtgaagagacaaaatattctcaaagctaaccag
aatttgacaaatcagttggttgagctggagaggcacttcaataatctggagatgaacaga
tccagtgaaacaggaagagtagcttctaatcgaagagctgtttattctaataagacaagg
tctagtcagacacaattatccagtgtatataatgcactgaactcgcagttggcagctgct
gagcagctatctgaatgcctttcaaagcagatatctgtgttaaatattggttctcctact
aggaagcaggggaccgtgaccaaagagttgtttgagtcaattggtttagcccacacaacc
gatgcaaccaaattttcaggcagcactcctaagccagttaagcggtttccatcagtgaat
gagcattcaaagggaatattagggccttccaagagtggtgagcccgagaccgctcgaagg
aggagagaatcactggatatgagcctggctagtttggaacctcagaaaacaactgttaaa
agaatagcacagcaacaacgcctcaaaatcagcagtgatctaccattcaggtcaaacaag
aaaatttttgattctcaaatggcagcaatatcacaggaaaagtcaagcgatagctccaat
tcatctatagtagaatcatatgtaagcagactgcattctctgagtgaagtttcagatgta
aaagaaaaaccgtcagaaccccaacagaaccctttgttcaaatggataaaggaatcaact
gggtcatctcaaatctcagagcaaaagcatattgagttaccagggcaaatgaaaagcact
gcacattcttcaaagttgacaccatcttcaccaccatcattcagctacacccgtatgggt
gcacaagatagtatcaacccatccagtgttccatcctttggaacaaaacatactgtgtct
aagccaaatactttaaccttcaaaaccactataacccctaaaagtaatgccagcacagag
ccaaatatattaccttccataacagcgtcaaaaacttctcagagtccactgtctgtgaaa
actactggggaatctggagatttgcctacattaactatgaagaacagacaggatagtcag
tcaatgaaatctttggggaacataaaaggaccgggtgcttctctgcagaacaagggtggc
atatttagagatcttggcaaatcgtcttttacttctgaacattccaagccggctgtatta
catgagaagactggccagcttagtggggttggcgatgctgtgcagaacactgtgaaagat
acccccaagatggcacctcaaccttctgcattctcgtcagctcctgttactcagactgat
tcatactccttaaggtcgactgtttactcttcagccacatcagcctcgtcaggtgcgaaa
acttcggaagttttatctagctcagtgcagaaagtttctccaatagtagccaggggtact
gtgtctagctcaatccctactcctgctaaggattcgtcaactggcttgagtcaaaatgct
tccaaaccagaaatgctaatatcggaggtaactagtaccatactttctgcaagttcgact
tcagtcatatcaaccactgaaagtaaaccttctgtgcctccaacaactggtgccagcttg
ccttctgctcatgtctctgttcctaaaacagcgccaacaacatcagaatcagttgtcact
tccacaggaaaagatggaggaccaaacactgacaccatcgcagccgatgaagatgatatg
gaagaggaggcgccttctgcaagtgccgaactcaactttggagcccttggtggattcagc
ctcgggtcccagccttcttcaagtcctcaaaagtctaatccttttggtgcctcctttggt
acatctgacaataaaagttcaggcacaccatttactttgacaaccagtccaggacagctt
ttccgaccagcgtcgctaagcattccttcagctcagccagcccaacaaccatctcaatca
actagttctagttctttttctagtacattctcaagtgggcttactggatttggacagcct
gcacaaattggatctggccagcagtcagcatttgggaagcctgcacagattggagctggt
cagcaggcaggatttgggcaggcagcacaaattcaatccggatttggtcagcctgcacaa
attcaatctggttttggtcagtcagcacaaattggatctgggcaacagtcaggatttggg
cagcctgcacaaattggggctgtccagtcaggatttgggcagcctgcacagtttggtgct
caacaggcacttggatcagtgctgggttcttttggacaatcgcgccagttaggaggcgta
ggttctggaggatttggtggatttgctagtgcttctacatctgggggttttggttcttta
tcttcaagtaatgctggatttgctggtgctgcaacagttgggggcttttcagcacctgct
gcttctgcgggtggtggttttgctgctgctactggtggaggttttgctgctcttgcctcc
aaaagtggtggttttgctggtgcagcttcatctggtggtggttttgctggtgcggcccag
ggaggtggctttggcagtggtggtggattcggatcctttggtggtaatcaaggagctggg
ttctcggcatttggagcaagtggaactggaagaccgccagctgatttcttgacacagatg
agaaagtag
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integrated database retrieval system