Sorghum bicolor (sorghum): 8075475
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Entry
8075475 CDS
T01086
Name
(RefSeq) uncharacterized protein LOC8075475 isoform X2
KO
K24155
rabconnectin-3a
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
8075475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sbi04131
]
8075475
Membrane trafficking [BR:
sbi04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
8075475
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
8075475
RAVE complex
8075475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
Motif
Other DBs
NCBI-GeneID:
8075475
NCBI-ProteinID:
XP_002455777
LinkDB
All DBs
Position
3:50290488..50307579
Genome browser
AA seq
2041 aa
AA seq
DB search
MGERDALPPLPLALGPPHLIPPAPTRDPRAIAFLPDLVGLPWVAYAAGSFLVVSHLPSPS
RDDNSNVSCSPFFRQVIDLRAPVSAVAWCGSGSGEVAAAAENSVSVFQPAPTSSPGSFGW
LLRWSITETFAITAVSWTGCGNGIVAVGSGVSMWTRLESSWQLTWRSTPQVPQALVSTTC
SVQGPVATGAALAPADGSVPVLVFLNDARRGLEQAELVHPQPVCMIQWRPCSLYVHDRSE
IRREILMTCCFDGTVRLWSEDEVARSKKQRGLQISFSVIAVMEVNNTLNGVLGVDISVRW
SMESGSVVSRDEKGRFKLFSGDLRESQVGKCEWLVSLGPGPCVSFWAVHCLDDVFPPRYP
RITLWKQSKLQGWGESYVNSGPPKSIEQSIFVEAVISRSLCSGPPVTCFLLHLLVDDSFV
WSALSTRLSADSGNHASSDSAESILCCLTKPVKQDGHKGSIRQVAVHPYSCEIELAVSMD
SNRMIFFWSLSTFSTLIPTLHAPMYPLWKLLCKFDLRNISEDVQYSCLCWAPSVTHDNRF
LVLGGESGADCFIVRIQKDEVLSCQKIFTIPFLAESNAEGPPDSIHTIPLDSKCSSCFVN
NSFLVVCLWKKTFQAFSWKVVLHSENQYVNGRCLCGFAPSSLSTTNQGAHVCFDNEMFSA
VVYEGSSVFPSGLEGEYPTCISVMLLNNTVLPIQQHDPYRTVPGYHIATGCSDGTVKLWK
MSCADNSLQTEKERHIWELVGMFGAHQGPIDTVLLSGCGRVITVSRNLKKNSTSIHIWEA
VKIRGDGNFLLEDTLMLQDHIVGLDGLSLGDGRFLLAVYLANELRIYSHKHSSFQNVLHT
ENSKEEHLWSCIVLSHAHHDIVGFHWGPKATVVLVHENHLSLFSSWLVTGDDEYMTQIHS
CPVVHEMLPCTNNFNEATFGKLKLPENYNNSRNVDSNDVLLTDQHSHYSHGFWSLLHIAD
RLSGPLASYHPRALVQYLYSGEWKRVDAALHHLFQSMKASETSKAMSKCSTCHKSSHSIP
ELPLSEYFAATVSNNISTKGFMWGEDRSNTTFNLLSPSTSILYEDGNLGINTTTSASRKP
EIVELLDKSSSIYGISDSEKNQILAISDLMAGITDQSYSSPYKNLDEAGRRFWVAVQFQQ
LHALRRPGDSSGCRVDSASIAWAFQSDCQDDLLNSVLPAEPTWPEMQKLGIGLWYTNVSQ
LRTRMEKLARLQYLKSKDPKDCALLYIALNRIKVLVGLFKISRDEKDKRLYEFLSRNFQE
ERHKAAALKNAYVLMGRHQWELAIAFFLLGDDTSSAVNVCAKNLQDEQLAIVICRLVEGS
GGPLERNLICNVLLPDAIERGDNWLSSLFEWMLGNYCQSVNRLFGCHPKLLINQNVLADP
EVGHYCAILSTKSSFRNSVGEAVSAKLSKFSFAVAACALNKCGLPLEALECLSTNSSIDG
KDSIISPGDGEHKIFDGILSPFSASKNWLSSSVISGVESNLKVTMASKYLSSLLRKHSLC
SQCNTSLSEEKVLNEYNNHQIEKLMCDITAVISIFDKRFSLKFADIAEKILIFCSHDGLL
FLAHVLLWGTRSPDVATDNRILECHPLCPLDYLLLFSFKESWKFLSRYVVFSSMCSVLSM
EHTNSTACAPKESHKYIITGLSNYLNVSRLLLRHDNSGNYILDDRSAVLAVMDLFEYIVD
FSFSWLYCDIKALLIMINPVLAASVNGDPFQVLLDQLMHAIRHKNHDISLNTEGEMPCAA
LSKTQLKKSVNSNLLADEKWHLVGTSVWVRLISVIEHHLREFFEKEGLEHEVGVSGSEFR
GLITSVAAKFVMDSIHFMSSSLVKLHASFLRKKLPMNSSSSLLFWLESKLSQQHPVSDSH
DHLSRISQLSNSENMEALFNILWEISVNPVDVCNAFVNEGVNCFSLSSINVTRSWKDIRC
PVVECDKVITQRSGEEHEHRLGSKNNGKGQGFTDKASSNGEVFFETKRRELIIQKEFQSP
REILRRSGELLEWRRRYVLTLSMRNKLLLLLIERALFSSIGATSSMTRIFQSMSGRDLIG
H
NT seq
6126 nt
NT seq
+upstream
nt +downstream
nt
atgggggagcgagacgcgcttccgccgctgccgctcgccctcggcccgccgcatctaatc
ccgccggcgcccacccgcgacccgcgcgccatcgccttcctccctgacctcgtgggcctt
ccctgggtcgcctacgccgccggctccttcctcgtcgtatcccacctcccctccccttcc
cgggatgacaacagcaacgtcagctgctccccgttcttccgccaggtcatcgacctccgc
gcccccgtctccgccgtcgcttggtgcggcagcgggagcggagaggtcgccgccgctgct
gaaaattctgtatccgtcttccagccagcgcccacctcttctccaggttcgtttggttgg
ctcctgagatggtctatcaccgagacgttcgccatcaccgctgtctcctggactggctgc
ggcaatggcattgtggcagttggctcaggtgtttccatgtggaccagattggagtcctcc
tggcagctcacctggaggtctacgccgcaggtgccgcaagcacttgtctccactacctgc
tccgtgcagggtcctgtcgcgacaggggcagctcttgctccagctgacggcagtgtgcct
gttcttgtgtttctgaatgatgccaggagggggctggagcaagctgagcttgtgcatccg
cagcctgtttgtatgatccagtggagaccctgttcgttatatgtccatgatcggtctgag
atcaggagagagatcctcatgacttgctgctttgatgggactgtccggctttggagtgag
gatgaggtggccaggtcgaagaagcagcgtggtttgcaaatatcattcagtgtcattgca
gtaatggaggtaaacaacactctgaatggagtcctcggagtggatatcagtgtgagatgg
tccatggaatctggcagtgttgtgtcaagagacgagaaaggtagattcaagttgttttca
ggcgatttgagggagagccaggttggtaaatgtgagtggcttgtaagtcttgggcccggt
ccttgcgttagcttctgggctgtccattgtttggatgatgtatttcctccaaggtaccca
cggattactttatggaaacagagcaaacttcagggctggggggagtcctatgttaactca
ggccctccaaaatctatagaacagtcaatttttgttgaggctgtcatctcaagaagctta
tgttctggtccacctgtaacatgctttttgcttcatttgctggtggacgattcattcgtt
tggtcagccttatccaccagactgtcagctgattctgggaaccatgcttcaagtgattct
gctgaaagtatcttgtgttgtttgactaagcctgtcaaacaagatggacataagggtagc
atcagacaagtggctgtccatccatatagctgcgaaatagagctagctgtctccatggat
tcaaacagaatgatatttttctggtctctgtcaaccttttcaactctcataccgacattg
catgcacctatgtatcctttatggaagctgttgtgcaaatttgatttgcgtaacatttct
gaagatgtccagtactcatgtttgtgttgggcgccttctgttactcatgataatagattt
cttgtccttggaggggaaagtggagctgattgtttcatcgtcagaattcagaaagacgag
gttctttcatgccagaaaattttcacaatccccttccttgcagaaagcaatgccgaaggg
ccacctgacagcattcatacaataccattagattctaaatgcagcagttgtttcgtgaac
aacagtttcctagtagtatgtctatggaagaagactttccaagctttctcatggaaagta
gtattgcattcagaaaatcaatatgtcaatgggagatgtttgtgtggttttgctcctagc
tcactttccaccacaaaccaaggggcacatgtatgcttcgacaatgaaatgttttcagca
gttgtttatgaaggttcttcagtctttccttctggcctggagggagaatatcccacatgc
atttctgtaatgctgctgaataatactgtactgcctatacaacaacatgacccttacaga
actgttccaggctatcatattgctactggttgctctgatggcactgtaaaactttggaag
atgtcttgtgcagataactctttacagactgagaaagaaagacacatctgggagctagta
ggcatgtttggtgctcatcaaggaccaattgacacagttttattgtcaggctgtggtaga
gttattactgttagtagaaatttgaagaaaaatagcacctctattcatatctgggaagca
gtaaaaatcaggggggatgggaattttctgctagaagatacactaatgttgcaggaccat
attgttggtttagacgggctatccttaggtgatggacgatttctacttgcagtttatcta
gctaatgagttgcgtatatattctcataagcattcttccttccagaatgtactacacact
gagaattcaaaagaagagcatctttggagctgtattgtattatcccatgctcatcatgat
attgttggctttcattgggggccaaaagcaactgttgtgcttgttcatgagaaccatctt
tcactcttcagttcatggctagtaactggagatgatgagtacatgacccagatacattct
tgtcctgtagttcatgagatgttgccatgtactaacaattttaacgaagctacttttggt
aaactcaagttaccagaaaattacaacaacagtagaaatgttgatagcaatgatgtcctg
ctaacagaccaacatagtcactattctcatggtttttggagcttgttgcatatagctgat
agattgagtggaccgctggcatcatatcacccaagagcacttgtccagtatctttattca
ggtgaatggaaacgtgtcgatgctgctctgcaccatctttttcaatccatgaaagcgagt
gaaacttcgaaggccatgtcaaagtgcagcacatgccataaatcaagccatagtattcca
gaacttcctttgtctgaatactttgcagcaacagtgtccaacaacatttctaccaagggg
tttatgtggggtgaagatagaagtaacacaactttcaatctgttgtcaccttcaacttca
attctttatgaggatggcaatttaggtatcaatactacaactagtgcatccaggaaacca
gagattgttgagctccttgataagagttccagcatatatggtataagtgactcagagaaa
aatcagatacttgcaatttctgatcttatggctggaatcactgatcagagctattcctct
ccctacaaaaaccttgatgaagcaggaagaaggttctgggttgctgtgcagttccaacaa
ctccatgctcttagaagacctggagattcatcagggtgccgtgttgattctgcttccata
gcgtgggccttccaatctgattgtcaggatgatctacttaattctgtgcttcctgcagag
ccaacctggccagagatgcaaaagcttggtataggattgtggtatacaaatgtgtcccaa
ctaaggacaaggatggagaagttggcaaggttgcagtatcttaaaagtaaggaccccaag
gattgtgctttgctctacatagcattgaacagaataaaagtgttggttggtcttttcaag
attagtagagatgagaaggataagcgtctatatgagtttttgtccagaaacttccaggaa
gaaaggcacaaggctgctgctctaaaaaatgcttatgtactaatgggaaggcatcaatgg
gagcttgctatagctttttttctccttggtgatgatacttcatcagcagtgaatgtttgt
gcaaagaaccttcaagatgaacagctcgccattgtaatttgtcggcttgttgaaggatct
ggagggcctctggagcgtaatctcatttgtaatgtgctacttccagatgcaattgagaga
ggagacaactggctgtcaagcctgtttgagtggatgttagggaattattgccagtctgtc
aatagactatttggttgtcatccaaagttgctgattaatcaaaatgtgcttgcagaccca
gaagtgggtcattactgtgcaattctctcgacaaaaagtagtttcagaaactctgttggt
gaagctgtatctgcaaagttatctaagttttcatttgcagtggctgcatgtgccttgaat
aagtgtggactacctcttgaagcacttgaatgcctatctactaactcaagcatagatggc
aaggatagcatcatctcacctggtgatggagaacacaagatttttgatggaatactgagc
cctttctctgcttctaagaattggctatcttcatctgtcattagtggtgttgagtccaac
cttaaagtaactatggcttcaaagtatctatctagccttctgagaaagcattcactctgt
tcacaatgcaacacatcattatctgaagaaaaagttcttaatgagtacaacaatcatcaa
attgaaaaacttatgtgtgatattacagcagtaatctcaatatttgataaaaggttctcc
ctcaaatttgctgatatagctgagaagatcctaatcttttgtagccatgatggtttattg
tttctagcgcatgttttgttatggggtactaggtcaccagatgttgcaactgataatcgt
attcttgaatgtcaccctctctgcccactcgattatctgttattgttttcattcaaagag
agctggaagtttcttagtcgatatgttgtcttctcctccatgtgttctgttctgagtatg
gagcacaccaattctactgcatgcgcacctaaagagagtcataagtacattataacaggt
ttgtcaaattacctgaacgtcagcaggttacttcttagacatgacaacagtggaaattat
attctggatgacaggtcagctgtgctggcagttatggatctgtttgagtacattgtagac
ttttccttttcttggttgtattgcgacataaaagcattacttatcatgataaatccagtt
ctagctgcttctgttaatggggatccctttcaagtactattagatcaactgatgcatgct
atacgccacaaaaatcatgatatatcattgaatacagaaggagaaatgccctgtgctgca
ttgagtaagacacaactaaaaaagagtgtgaattcaaatcttttagcagatgagaagtgg
catttggtaggcacttctgtgtgggttcggttgatatctgtgattgaacatcatctaagg
gaattctttgaaaaagagggacttgaacacgaagttggtgttagtggttcagaattcagg
ggtcttatcacttctgttgctgcaaaatttgttatggattccattcattttatgtcatct
tcgttagtaaaactgcatgcatcgttcttgaggaagaagttaccaatgaattcaagttcg
agtttgctgttctggttagagtccaagttgtctcagcaacacccagtcagtgatagccat
gatcacctctcgagaatttcgcagctttcaaacagtgagaatatggaggcgttgtttaat
attttgtgggaaatatctgttaatcctgtggatgtttgtaatgcctttgtgaatgaagga
gttaattgtttttctttaagcagcataaatgtcactagatcttggaaggacataagatgt
cctgtggttgagtgtgataaagttattactcaaagaagtggagaagaacatgaacacaga
cttggctccaagaacaatgggaagggacaaggattcactgacaaagcctcttctaacggc
gaagtgttttttgaaactaaaagaagagagttgatcatacaaaaagagtttcagagccca
agggaaattttaaggagaagcggggagcttcttgagtggcgcaggcgatatgtcttaact
ctgtcaatgagaaacaagctgctattgctactaatcgaaagggccttgttttcttcaatt
ggagcgacaagcagcatgacaagaatttttcagagtatgtctggtcgggatctgattggc
cattag
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