Sorghum bicolor (sorghum): 8075639
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Entry
8075639 CDS
T01086
Name
(RefSeq) THO complex subunit 4D
KO
K12881
THO complex subunit 4
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03013
Nucleocytoplasmic transport
sbi03015
mRNA surveillance pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8075639
09122 Translation
03013 Nucleocytoplasmic transport
8075639
03015 mRNA surveillance pathway
8075639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8075639
03041 Spliceosome [BR:
sbi03041
]
8075639
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
8075639
TREX complex
8075639
Spliceosome [BR:
sbi03041
]
Complex C
Other components
EJC/TREX
8075639
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
8075639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Motif
Other DBs
NCBI-GeneID:
8075639
NCBI-ProteinID:
XP_002445519
UniProt:
C5YL34
A0A921QMP1
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All DBs
Position
7:complement(55216226..55221542)
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AA seq
272 aa
AA seq
DB search
MSYYERRGGDRGSGRIQGSGGRGGHVLRGRSGLPPRGPLGVNSRPSARTIAKSFSRTKDM
TWRPDLFSDSMAASGIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHYDGYGRPN
GTAEVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLGLPMTPRINVVGASNGRATRT
VVMTPEFSQRGRGSSSRPLSNPSNRFNNRGGFQAGRGRGQFQARGRGRGQFQSRGRGRGQ
FQGRGRGRKPEKTADELDKDLESYHAEAMKTD
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgtcatattacgaaagaaggggtggagataggggtagtggccgtattcaaggaagtggt
gggcgaggtggacatgtcctgcgtggaagatcaggattgcctccccgaggacctcttggg
gttaactcccgtccatctgcacgcactattgctaagtcatttagcagaaccaaagacatg
acctggagacctgatctatttagtgatagcatggcggctagtggaatagaaactggtaca
aaattgtacatttcaaacttggactatggggtttctaatgaggatataaaggagctgttt
tcggaagttggccatttgaaacgctttgctgttcactatgatggttatggccgcccaaat
ggcactgcagaggtggtgtttacacgaaggagcgatgcaattgctgcactgaagcgttac
aataatgttctacttgatggaaaagctatgaagatagaagtcattggaagtgacttaggc
ttgcctatgacacctcgtataaatgtcgttggtgcttctaatggcagagctacaagaaca
gttgttatgacgcctgagtttagtcaacgtggcaggggttcaagcagtagacctctaagt
aatccaagcaacaggtttaacaaccgtggtggtttccaagctggtcgaggccgtggccag
ttccaggcccgtggcaggggccgtggccagttccagagccggggcaggggccgtggccag
ttccagggccgtggcagagggaggaagcctgagaagactgcagatgagttggataaagac
ctggaaagctatcacgcagaggccatgaaaaccgattga
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