Sorghum bicolor (sorghum): 8076027
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Entry
8076027 CDS
T01086
Name
(RefSeq) LOW QUALITY PROTEIN: protein TRANSPARENT TESTA GLABRA 1
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
8076027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbi04121
]
8076027
03036 Chromosome and associated proteins [BR:
sbi03036
]
8076027
Ubiquitin system [BR:
sbi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
8076027
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
8076027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR41
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_1st
WD40_RFWD3
MIOS_WD40
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
8076027
NCBI-ProteinID:
XP_002452749
UniProt:
C5Y0X7
LinkDB
All DBs
Position
4:62315375..62318806
Genome browser
AA seq
356 aa
AA seq
DB search
MDLPKPPSTAASSSGAETPNPHAFTCELPHSIYALAFSPGAPVLASGSFLEDLHNRVSLL
SFDPVRPSAASFRALPALSFDHPYPPTKLQFNPRAAAPSLLASSADTLRIWHAPLDDLSA
TASAPELRSVLDNRKAASEFCAPLTSFDWNEVEPRRIGTASIDTTCTVWDIDLGVVETQL
IAHDKAVHDIAWGEAGVFASVSADGSVRVFDLRDKEHSTIVYESPRPDTPLLRLAWNRSD
LRYMAALLMDSSAVVVLDIRAPGVPVAELHRHRACANAVAWAPQATRHLCSAGDDGQALI
WELPETAAGAAAVPAEGIDPVLVYDAGAEINQLQWAAAHPDWMAIAFENKVQLLRV
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atggacctacccaagccgccgtcgacggccgcctcgtcgtcgggggcggagacgccgaac
ccgcacgccttcacctgcgagctcccgcactcgatctacgcgctcgccttctcccccggc
gcgcccgtcctcgcctccggcagcttcctcgaggacctccacaaccgcgtctccctgctc
tccttcgaccccgtccgcccctccgccgcctccttccgcgccctcccggcgctctccttc
gaccacccctacccacccaccaagctccagttcaacccgcgcgccgccgcgccgtccctc
ctcgcctcctccgccgacacgctccgcatctggcacgccccgctcgacgacctctccgcc
accgcctccgcgcccgagctccgctccgttctcgacaaccgcaaggccgcctccgagttc
tgcgcgcccctcacctccttcgattggaacgaggtcgagccccgccgtatcgggaccgcc
tccatcgacaccacctgcaccgtctgggacatcgatctcggcgtcgtggagacgcagctc
atcgcgcacgacaaggccgtccacgacatcgcctggggggaggccggggtcttcgcctcc
gtgtcggccgacggctccgtccgcgtcttcgacctccgggacaaggaacactccaccatc
gtctacgagagcccccgccccgacacgccgctcctcaggctggcgtggaaccgctctgac
ctccgctatatggccgcgctgctcatggacagcagcgccgtcgtcgtgctcgacatacgt
gcgcccggggtgccggtggccgagctgcaccggcaccgggcgtgcgccaacgcagtcgcg
tgggcgccgcaggccactaggcacctctgctcggctggggacgacgggcaggcactgatc
tgggaactgcccgagacggcggcgggcgcggcggctgtgcccgccgaggggattgatcct
gtgctagtgtacgacgcaggtgccgaaataaaccaacttcagtgggcggccgcccacccg
gactggatggccatcgcctttgagaacaaggtccagcttcttagggtctga
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integrated database retrieval system
