Sorghum bicolor (sorghum): 8076299
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Entry
8076299 CDS
T01086
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03030
DNA replication
sbi03410
Base excision repair
sbi03420
Nucleotide excision repair
sbi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
8076299
03410 Base excision repair
8076299
03420 Nucleotide excision repair
8076299
03430 Mismatch repair
8076299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbi03032
]
8076299
03036 Chromosome and associated proteins [BR:
sbi03036
]
8076299
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8076299
DNA replication proteins [BR:
sbi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
8076299
DNA Replication Termination Factors
ELG1-RFC complex
8076299
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
8076299
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
8076299
Check point factors
HRAD17(Rad24)-RFC complex
8076299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_22
Rad17
RuvB_N
Mg_chelatase
AAA_16
AAA_11
ResIII
AAA_assoc_2
AAA_24
AAA_5
AAA_14
SLFN-g3_helicase
PhoH
nSTAND3
AAA_2
AAA_19
DNAX_ATPase_lid
AAA_30
AAA_23
AAA_28
AAA_7
AAA_25
IstB_IS21
DUF3853
Cdc6_lid
Parvo_NS1
RNA_helicase
bpMoxR
Gp44_lid
Motif
Other DBs
NCBI-GeneID:
8076299
NCBI-ProteinID:
XP_002441912
UniProt:
C5YST1
LinkDB
All DBs
Position
8:5896183..5900250
Genome browser
AA seq
339 aa
AA seq
DB search
MAPLVPMSQPWVEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTAL
AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTARKAGYPCPPYKIIIL
DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLVSRCAKFRFKPLSEEVMSN
RIMHICNEEGLNLDAQALSTLSAISQGDLRRAITYLQSAARLFGSSISSSDLISVSGVIP
EDVVKSLLAACRSGEFDVANKEVSNIIADGYPVSQLMAQFLDVIVGADDIPDDQKARICK
KLGETDKCLVDGADEYLQLLDVASETIRALFNMPQTLVF
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgctcgtgccgatgtcgcagccatgggtggagaaataccggccgaggcaggtc
aaggatgtggctcaccaggaggaggtgattcgggtgctcaccaataccctccagaccgcc
gacctgccgcacatgctgttctacggcccgccgggaacaggaaagaccaccaccgcactc
gccatcgcctaccagctctacggtccagagctgtataagtcaagagttttggagctcaat
gctagtgatgatcgtggaattaatgttgtgaggacgaaaatcaaggactttgctgctgtt
gccgttggtactgcacggaaagctggttatccctgtccaccttacaagattattatactt
gatgaagcagattcaatgacagaagatgcccagaatgctttgaggcgtaccatggagact
tactccaaagtgactagattcttttttatatgcaactatatcagcaggataatagaacca
cttgtgtcgagatgtgcaaagtttaggttcaagcctctttcagaagaagtgatgagcaac
cgcattatgcacatatgcaatgaagaaggtctcaatcttgatgctcaggcactgtccaca
ctgagtgccatttctcaaggtgatcttcgtcgtgctataacctatcttcagagtgcagct
cgcttatttggatcttctatctcttccagtgacttgatcagtgtttcgggggttatccct
gaagatgttgtcaagtcactgcttgcagcttgcagatctggtgaatttgacgtggcaaac
aaggaagttagcaacattatagcagatggatatccagtctcacagctgatggcacagttt
ctagatgtcattgttggcgcggatgatattccagatgatcaaaaggcaaggatatgtaaa
aagcttggggaaactgacaagtgcttggttgatggggcagatgagtatctacagctgttg
gatgtcgccagcgagactattcgtgctcttttcaacatgccacaaacgctggtcttctaa
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