Sorghum bicolor (sorghum): 8076437
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Entry
8076437 CDS
T01086
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1 isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi04120
Ubiquitin mediated proteolysis
sbi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
8076437
04120 Ubiquitin mediated proteolysis
8076437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbi04121
]
8076437
Enzymes [BR:
sbi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
8076437
Ubiquitin system [BR:
sbi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
8076437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-RING_5
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
8076437
NCBI-ProteinID:
XP_002438282
UniProt:
A0A921Q475
C5Z949
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All DBs
Position
10:complement(15506450..15526815)
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AA seq
504 aa
AA seq
DB search
MIRLQTYAAFSLLATASAVYYAFSSREQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQL
VKRLFLGSLREAEVERLNEQAWREVVEILFAVTIFRQDFSVSFLAMVAALLLIKALHWLA
QKRVEYIETTPSVPLLSHIRIVSFMAFLLIVDCLFLSNSLRSLIQKWEASVAIFFSFEYM
ILATSTVSTFVKYVFYVSDMLMEGQWERKAVYTFYLELISDLVHLSLYMLFFIAIFLNYG
VPLHLIRELYETFRNFRIRIADYVRYRKITSNMNERFPDATAEELNASDATCIICREEMT
TAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPIIPPDSGRSASARQHGGQPGVQPAAGTD
TPASEAAQGDNMSRRQAKLEAAAAAASLYGRSLVYPPANTLNRSGPQSTSSTPQSEASNS
NQSQKDQELQIQNSSDGLAPSPFSAHGAIGSGPSTSNLENSLQKAQENFIKSQIEMLQIQ
LQMIRRGAAVSVTNSGNDEHKRND
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgatccgtcttcagacgtacgcggcgttcagcctgctggcgacggcgtcggcggtgtac
tacgccttcagcagccgggagcagttctacccggccatggtctacctctccacctccaag
atctgcttcgttctgctcctcaacacgggcctcgtcgccatgtgcgtcgcctggcagctc
gtcaagcgcctcttcctgggctcgctccgggaggccgaggtcgagcgcctcaacgagcag
gcctggcgggaggtcgttgagatcctcttcgcagtcaccatcttccggcaggatttctcg
gtctctttcctcgccatggtcgccgcgctgctccttattaaggcactgcactggctggcc
cagaagagggtcgagtacatcgagacaacaccttcagtgcccttgctctcacacatcaga
atcgtctccttcatggcgtttctcctcattgtcgactgcctcttcctgtcaaactcgctc
aggtcactcatacagaagtgggaggcatcggttgccatcttcttctccttcgagtatatg
atactagcaacatcgacagtatcaacatttgtgaagtatgtattctatgtcagtgacatg
ctaatggaaggtcaatgggagaggaaggcagtgtatacattttacttggagctgatcagt
gaccttgtgcacttgtcactatacatgctcttcttcatagctatcttcctgaactatggt
gtcccacttcacttgattcgtgagctatatgagaccttccgcaacttcagaattcgcatt
gcagattatgtacgctacagaaagatcacttccaacatgaatgaacgctttccagatgct
acagcagaagaactcaatgcgagtgatgctacatgtattatttgccgtgaggagatgact
acagcaaagaagctgctttgtgggcatctgttccatgtgcattgcttaaggtcttggcta
gagcgccaacacacttgccctacgtgcagagctccaattattcccccagacagtggacgt
tctgcatcagcacgacaacatggaggtcaacctggtgttcagcctgctgcaggtactgac
actccagcctcagaagctgcgcaaggtgacaatatgagcaggcgccaagcaaaactcgaa
gctgctgctgcagctgcttctttatatggaagatctcttgtttatcctccagcaaacacc
ctaaataggtcaggtcctcagtctacatcaagtacaccacaatccgaagctagtaactcc
aatcaatcacagaaagaccaagaactccagatccaaaactcaagtgatggtttagcacct
tcgccttttagcgcacatggtgccattggttcaggaccaagcaccagcaatcttgaaaat
tcactgcagaaggcacaggaaaactttataaagagccagatagagatgttacaaatccaa
cttcaaatgattcggcgcggtgctgctgtgtcggtgactaacagtgggaatgacgagcac
aaaaggaatgactga
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