Sorghum bicolor (sorghum): 8076483
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Entry
8076483 CDS
T01086
Name
(RefSeq) multiple RNA-binding domain-containing protein 1
KO
K13126
polyadenylate-binding protein
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03015
mRNA surveillance pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8076483
09123 Folding, sorting and degradation
03018 RNA degradation
8076483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8076483
03041 Spliceosome [BR:
sbi03041
]
8076483
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
8076483
mRNA cycle factors
Stress granule specific factors
8076483
Spliceosome [BR:
sbi03041
]
Complex C
Other components
Complex C specific factors
8076483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
RRM_10
Motif
Other DBs
NCBI-GeneID:
8076483
NCBI-ProteinID:
XP_002448793
UniProt:
C5YAM7
LinkDB
All DBs
Position
6:complement(60337845..60343842)
Genome browser
AA seq
1076 aa
AA seq
DB search
MGRSGLTGQLQESQSDDMSAAAGYEEGSEEEEPFEVEFYDDDDDELDVEQCNGTALPENK
DASDKEPFEVDLCSDKGSDKADSSHSEHYVNLVPDGHNTCRNQLYVAEPCQGLMIDKGEF
VEKKSNYVQPSEQEQNKKELKQVLRHNNSAQKEVSVAKEKETMPFKKRLSVKFAADVSCY
TYSTESFAAATVEKRKVQSDDQDKHLCKRQELSFSSAHDEGKLKEGNGTNLFVGNLPPSL
ASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIKHMNGRMVEGRML
EVRLAGAPSSGSTKEMDMSKLYVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHATGLSK
GYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRVAAVSSSGSNTSVQAISETDHQLTKEV
DMSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHA
VIELNGCLVEGRKILVRVRPPSSPVESHANNRTLKEIDMSNLYVCNIPSSMNKAKLVELF
LPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAAEAVAMMNGALIEGETISVRVAGLSPS
VSSSVSQHSPHSEINASPEINNCRLYVTNLPQTMSADKLVSLFMPFGQIDRVVMYAEYSF
VLYADINSAAKALKHMDGYLIEGKRLVVKGSEPLPANAAQSACSQSGSKLVKEIDMANLY
VGRVPSAVTCEQLVQIFCLYGEIVQAKKFDAGYGMIRYANASSAAAAIDHLDGYQIGGST
LVVRVAGLPAESDVATFARTPQTPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQI
TQAKVVVDKFTGVSKGFGFVRFADAYSAATAITHMNGYPLDGHMLAVRTAGVQPSDMASY
MAHFYSYFTSTDPSRMAVGIPTSDWSYYYGQSAYNPYYYAESAYTTPAVHQGQGAESAAT
AAGKTSQLEGLSGPEPVGSVAERDGSSVSNPAASDGSRLDVWAGPPGFESHAVTKKDTTT
MNTSQAWAVAKKEVSMMNTSQACSKVRMVQSGQSEGWAGPPGFEPHAIAKKDACTI
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atggggagaagtggcttgactggtcagctgcaggagagtcagagtgatgacatgagtgct
gctgctggttatgaggaaggcagtgaggaggaagaaccatttgaggttgaattctatgat
gacgatgatgatgagctagatgtggagcaatgcaatggcactgctctgcctgaaaacaag
gatgcaagcgataaggaaccttttgaagtagacctttgcagcgataaaggcagtgacaag
gctgactcatctcattcagagcattacgtcaatctggtgcctgatggccacaatacttgc
aggaaccagctgtatgtggcggagccatgtcaaggtctaatgattgacaaaggggaattt
gttgagaagaagtccaactatgtgcaaccttcggaacaagaacaaaataagaaagagctg
aaacaagtgttgaggcacaataactctgcgcagaaggaggtatctgtggccaaagaaaag
gaaacaatgccattcaaaaaacggttatctgtcaagtttgctgctgatgtatcttgttat
acatacagtacagaaagttttgctgctgctaccgtagagaaaaggaaagttcaatctgat
gaccaggacaagcacctgtgtaagagacaagagctctcattttcttcagctcatgatgag
ggcaaactgaaagaagggaatggcactaatttgtttgtgggtaacctaccaccttccttg
gcttctcacaagctcattgaactatttctgccatttggaagaattgttaaatcaagagtt
gtggatgattgcttcactggttcgagcaagggatatggctttgtgcagtattctgatcct
cgttatgctgctgaagctattaaacacatgaatggacgcatggttgagggaagaatgcta
gaggtcagactggctggtgctccgtcatcaggttccacaaaagaaatggatatgagtaag
ttgtatgtctgcaaccttcccttgctcctgcatgaagacaagttgcatgatctttttgta
ccttatgggcaagtaaccagtgtgaaggtaatgagggatcatgccacggggttaagtaaa
ggatatggctttgtgaggtactctgatcctcaacatgcagctcatgccattttccagctg
aatggacatctgattgaggggaagaagatggaggttcgagtggctgctgtttcctcatca
ggatccaatacatctgtccaagctatatcagagactgatcatcaactcacgaaagaggtg
gacatgagtaatgtgtatgtccaaaaccttcccttgctcatgaatacagacaaattgctc
aatcttttcctaccttatgggaaagtaactagtgcaaaggttgccatggattacacgtca
ggtataagtaaaggatatggctttgtgaagttctctgacccacacgatgcagcccatgct
gttattgagttgaatggatgcctggttgaggggaggaagatcttggttcgagtaagacca
ccaagctcgcctgtggaatcacatgccaacaataggaccctcaaagaaatcgacatgtct
aatctatatgtgtgtaacatcccctcatccatgaacaaagccaagttggtggagcttttc
ctgccatttggtaggatcacccatgcaatggtggtggaacaatccaataattcaagtaag
ggatatggatttgtcaaatttgctgattctcattgtgctgctgaggctgttgcaatgatg
aatggagcactgattgaaggtgaaacgatctcagtcagagttgctggcctttctccatca
gtatccagctcagtttcacagcattcaccacactcagaaataaatgcctctcctgaaatc
aacaactgtagactgtacgtcaccaaccttccacagaccatgtcagctgacaagcttgtt
agtcttttcatgccctttggtcagattgacagggtggtgatgtacgcggagtacagtttt
gtgctatatgcagatataaactcagcagcgaaggctctcaagcacatggatgggtacttg
attgaaggaaagaggctagtagtcaagggatctgagcctcttccagccaatgcagcacaa
tctgcttgttcgcagtcaggtagcaagcttgtaaaagaaattgacatggctaatctgtat
gttggcagggttccatcagctgtgacctgtgaacagctggtgcagattttctgcctatat
ggagaaattgttcaagctaagaagtttgatgccgggtatggcatgatcaggtatgctaat
gcttcatctgctgctgctgcaattgatcatttggatggttaccagatcggaggaagcact
ctggttgttagagttgcagggcttcctgcagaatctgatgtagccacatttgctcgaacc
cctcagacacctggcaatgagcacagacaaattgacatgactaacctatatgtgggctac
ctcccgccgtacgttactactgataagttgattgaacttttcctgccatgtggccaaatc
actcaagcgaaagtagttgtggataagttcaccggtgtcagcaagggatttggatttgtc
agatttgctgatgcttactctgctgctactgcaatcactcacatgaatggttacccattg
gatgggcatatgttggcggttagaacagcaggtgtccaaccaagtgacatggccagctac
atggcacatttctactcctacttcacttccactgatccctcaaggatggctgttggaatc
ccgacatcagactggtcatactattatggtcaatctgcatataacccatactattatgct
gaatccgcatacaccacaccggccgtgcaccagggtcaaggtgctgaatctgctgcgact
gctgctggtaaaacatctcagctggaaggcctgtctggacctgaaccggtcggttcagtt
gctgaaagagatggctcttctgtgtcaaatcctgctgcttctgatggttctcggttggat
gtttgggctggtccacctggctttgagtcccacgctgtcaccaagaaagatactactaca
atgaatacttctcaagcttgggctgtcgccaagaaagaggtcagtatgatgaatacttcc
caagcatgctcaaaggtgcggatggtacagtcaggccagtcggaaggttgggctggtcca
cctggctttgaaccccatgccatcgccaagaaagatgcctgtacaatctga
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