Sorghum bicolor (sorghum): 8076520
Help
Entry
8076520 CDS
T01086
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 1 isoform X1
KO
K15692
E3 ubiquitin-protein ligase RNF13 [EC:
2.3.2.27
]
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbi04121
]
8076520
Enzymes [BR:
sbi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
8076520
Ubiquitin system [BR:
sbi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
8076520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PA
zf-RING_2
zf-RING_11
zf-C3HC4
zf-C3HC4_2
zf-rbx1
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
AF_0924
zf_RING_Vps8_fungal
zf-C3H2C3
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
8076520
NCBI-ProteinID:
XP_002447380
UniProt:
C5YB45
A0A921QUU1
LinkDB
All DBs
Position
6:60998563..61002534
Genome browser
AA seq
501 aa
AA seq
DB search
MKSSRFLFLCAMFCLMARLGAANVVLMGNNLTLSFDDIEASFSPGVKGSGVSGVVYASEP
LNACSPLTIKTVNGPPSPFALIIRGGCTFDEKVKNAQDAGFKAAIVYDNKNSGVLVSMAG
SSSGIHIYAVFVSKASGEVLKKFSGNMDVEVWILPTFENSAWSIMAISFVSLLAMCAVLG
TCFFVRRHRIRREHPRIAEDREFHGMSSQLVKAIPSLIFTKVQEDNCTSSMCAICLADYN
VGEKLRVLPCRHKFHAACVDLWLTSWRTFCPICKRDARSGASEVVATEATPLLSSAARLP
SFRSSVAASPPRPISRHPSSHSVSRAYSVSSTPNSPNPFISSHISSPGIRASRSITDLGN
ISSLHPRISHLSSTHSLVGSHLSPPISIRYWSSHVAHSGYGSPSPHVSSSYISNSGYGSS
SYCYLGLGGSSHSQHGTYLRRCGESGPSLCTMVPQQLQWETNVAAGASSAKSLRQSSYLR
HCGDSDASLSDMTSAQSLPRC
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaagagtagtagatttctgttcctttgtgcaatgttctgtcttatggctcggctggga
gctgccaatgtcgtgctaatggggaataatctgaccctgtccttcgatgacattgaggcg
agcttttctccaggagtgaaagggtctggagtcagtggagtagtttatgcttctgaacct
ttgaatgcctgcagcccattaacaatcaaaacagtcaatggccctccatctccctttgcg
ttaattataagaggcgggtgcacatttgatgagaaagtaaaaaatgcacaggatgctgga
ttcaaagctgcaatcgtatacgacaataaaaatagtggggtcctggtttcaatggctgga
agctcaagtggcattcatatatatgccgtgttcgtttcaaaggcctcgggagaggtgttg
aagaaattctcaggcaatatggatgtagaggtgtggatactacctacttttgagaactca
gcctggtcgatcatggcaatctcattcgtatcgctacttgccatgtgtgctgtactgggt
acgtgtttctttgtgagaaggcatcgaataaggagggagcaccctagaatcgcagaagat
cgagaattccatggaatgagcagtcagttagttaaggctattccaagtcttatttttaca
aaagtgcaagaagataactgcacatcttcaatgtgtgccatttgcttggcagactacaat
gtcggagaaaagctaagagtgctgccttgccgtcacaagtttcatgcagcttgtgtggac
ttgtggctgacttcttggcgaacattctgtcctatatgcaagagagatgcaaggagtgga
gcatcagaagttgttgcgacagaggctacccccttgctttcttctgctgctcggttacct
tcattccggtcgagtgtggcagcatcccctccaaggccaataagccggcatccttcatcg
cactcggtttctcgtgcttactctgtttctagtacccccaattctcccaacccctttata
tcttctcacataagctcacctggcatccgtgcaagcagaagcatcacagaccttggaaat
atatcatctctccatcctcgcatctcacatttgtcatcgacgcactccctggttggcagc
cacttgtctccaccaatcagtataaggtattggtcgtcccatgtggcgcattcagggtat
ggatcacccagtccacacgtgagttcatcctacatctccaattctgggtatggttcttca
agctactgctatctgggactgggaggctccagccacagccagcatgggacatacctaagg
cgctgtggagaatcggggccaagcctgtgtaccatggtgccgcagcagttgcagtgggag
actaatgtagcagcaggtgcgtcgtcagcaaagtccctgcggcagtcctcctacctgaga
cactgtggcgattcagacgccagtttgtctgacatgacgtcagcccagtcgttgccgagg
tgctga
DBGET
integrated database retrieval system
