Sorghum bicolor (sorghum): 8076844
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Entry
8076844 CDS
T01086
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8076844
09123 Folding, sorting and degradation
03018 RNA degradation
8076844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8076844
03041 Spliceosome [BR:
sbi03041
]
8076844
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8076844
mRNA degradation factors
5'-3' decay
Lsm complex
8076844
Spliceosome [BR:
sbi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
8076844
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF7452
Motif
Other DBs
NCBI-GeneID:
8076844
NCBI-ProteinID:
XP_002441037
UniProt:
C5YXH0
LinkDB
All DBs
Position
9:complement(47755613..47757828)
Genome browser
AA seq
88 aa
AA seq
DB search
MSQNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEG
RRITKLDQILLNGNNIAILVPGGSPPDV
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagaacaacccgtcccagctcctcccctcagagctgatcgaccggtgcatcggg
tccaagatctgggtgatcatgaagggggacaaggagctcgttggcaccctctgcggcttt
gatgtctacgtcaatatggtgctggaggacgtcactgagtatgaatacactgctgaaggg
cgccgcattacaaaactcgaccagatcctcctgaacggcaacaacatagccattttggtt
cctggtggttcaccacctgatgtgtaa
DBGET
integrated database retrieval system