Sorghum bicolor (sorghum): 8076856
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Entry
8076856 CDS
T01086
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4 isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
8076856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8076856
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
8076856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
8076856
NCBI-ProteinID:
XP_002439747
UniProt:
C5YXJ5
LinkDB
All DBs
Position
9:48050180..48057821
Genome browser
AA seq
1535 aa
AA seq
DB search
MDRAAPRARGRRRRGVSQAAPSSSRARRRDKAPVVVVDLGDDEDEDCGGGGGARKTVGGA
AGGRGGSTEASPPPPPPMMVPAGAVAMRTRSRRRAMQAAAVVEETPTTKRRKRGATTPDA
AEASRGRGSKAAAASRATSRDKRRAGASRSTSRDKRRARSGRASEPARAARACKRKGIEL
GAETEVDAPARSERAKAPCVSESDDDGGRGDDASDDGNAEPRAGVAIGADLVNGDRRTAK
GEDHIEEHGGDQENSAVNLNDDLVSGDAEAVEGAGDEDTRGNSGLASTADVVAEEMAPFE
DDYDDEMLEEQLVGDVIRAYSNGRNFDADEADWEAEDEMEFDDDADNSDFMDDAHDSDFV
NDADEGGKSGDDAENSDFMDDAHDSDFVNDADEGGKSEPIKSHAKMEIQDLVNQKVVLCG
GGCEEEGGEKEELGVGKEAGKKEDVEPKSEAAPGSDKGGSHLETMSSDEEIKVLENMSSA
PSRKASVQSKLPTIPSCVAWRTRSSWGINRDRLSYNTYFEALSDEPKEDDDDTEVELDED
EDGNNDDGSSDAYDKDDEEKEEEEEEEEAERRKLNNGIYTSDDDMINITVPTSRYDMFER
KNISRYDMFKRKNTSRYDIFKRKNTSRYDIFKRKKTSRYDIEWVEDEDKDANVDTLQPIS
LRKGSSWNPVAVGNDTFTEQQKQSRFTWQLERRKKNKLEMKTNPLYERDLNSDSNSSGSD
QIRKYGFKRDGSHKVDMKKKHTSSKSGKKSSSAIMLKRQSLLKLLVDKMSGDKSLESFSF
DQNPQLQFIFKEMHPLVFSFGDEDLEAADRPEQDVGLDMLWADFDFALESENIGTYYDDE
GQEEGNQLDFSLAPVTPCSRGKHEFIIDDRIGIRCKYCSLVNLEIKFMFPSLISGFAEKS
AWPNAKGVKDTLMFHDLYEQTGSDIEQSQDLHQYGTVWNLIPGVISTMYEHQREAFEFMW
TNLVGGIRLDELKHGAKPDVVGGCVICHAPGTGKTRLAIVFIQTYMKVFPDCRPVIIAPR
GMLFAWDEEFKKWNVDVPFHIMNTTDYTGKEDREICKLIKKEHRTEKLTRLVKLLSWNKG
HGILGISYGLYTKLTSEKPGCTEENKVRSILLDNPGLLVLDEGHTPRNERSIMWKTLGKL
KTEKRIILSGTPFQNNFLELYNILCLVRPRFGEMFLTKGRVGRRHYVSKKQKDKFSDKYE
KGVWASLTSNVTDDNAEKVRSILKPFVHIHNGNILRTLPGLRESVIILKPLPLQKSIIRK
VENIGSGNNFEHEYVISLASTHPSLVTAINMSEEEASLIDKHMLGKLRSNPYEGVKTRFV
MEVVRLCEALREKVLIFSQYIQPLELIKEHLRKFFKWREGKEILQMDGKILPRYRQASIE
AFNNPNNESRVLLASTRACCEGISLTGASRVVLLDVVWNPAVGRQAISRAFRIGQKKFVY
TYNLITYGTGEGDKYDRQAEKDHLSKLVFSTEDEFNNVRNMLSRAEMDHCSKLISEDKVL
EEMTSHDQLKGMFLKIHYPPTESNIVYTYNQITPE
NT seq
4608 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcgccgcgccgcgcgctcgcggccgccgccgccgcggcgtatcccaagcggcg
ccgtcctcctcccgcgcgcgccgccgcgataaggcgcccgtcgttgtcgtcgacctgggc
gacgacgaagacgaagactgtggcggcggtggcggggccaggaagacggtgggtggcgct
gcaggcgggcgcgggggctccacggaggcttctccgcctccgccgccgccgatgatggtg
ccggcgggagcggtggcgatgcggacacgatcgaggaggcgggcgatgcaggcggcggcc
gtggtggaggagacgccgacgacgaagaggaggaagagaggagcgacgaccccagatgcc
gcggaggcgtcccgtggtcgggggagcaaggccgctgcggcctcgagggcgacctcgaga
gataagcggcgcgctggagcgtcgaggtcaacgtcgagagataagcggcgcgcgcgctcg
ggacgagcctcggagccagctcgcgcggcccgcgcgtgcaagcgcaaaggcatcgagttg
ggggcggaaacagaggtggacgcccccgctcggagcgaacgtgcgaaggcgccgtgtgtc
agtgaaagtgatgacgacggcgggcgaggcgatgacgcttctgatgacgggaatgcggag
cctcgcgccggggtcgccattggcgctgatctggttaacggggatcgtcggacagctaaa
ggtgaggatcatatcgaggaacatggcggagaccaggagaacagtgctgtgaatttgaat
gatgacttggtctcaggtgatgcagaggcggtggaaggtgctggtgatgaggacacaaga
gggaacagtggcctggcatcgactgctgatgtggttgctgaggagatggcaccctttgaa
gatgactacgatgatgagatgttggaggagcagcttgttggagatgtgatccgtgcttac
agtaatggcagaaactttgatgcagatgaagcggattgggaagcagaggatgagatggag
ttcgatgatgatgctgacaatagtgattttatggatgatgctcacgatagtgattttgtg
aatgatgctgatgaaggtggcaagtccggtgatgatgctgagaatagtgattttatggat
gatgctcatgatagtgattttgtgaatgatgctgatgaaggtggcaaatccgaaccaata
aaaagtcatgctaagatggaaatacaagacttggtgaaccagaaagttgttttgtgtgga
ggggggtgtgaggaggaggggggcgagaaggaagagttgggtgtgggaaaggaagcaggt
aagaaggaggacgtggaaccaaagagtgaagcagctccaggttctgataaagggggctcg
cacttagaaactatgagctctgatgaggaaatcaaggtgcttgaaaatatgagtagtgcc
ccctccaggaaggcgtcagttcaatcgaagctaccaactattccatcttgtgttgcatgg
agaactcgatcctcatgggggataaatcgagatagactatcatacaatacatattttgag
gcattatctgatgagccgaaagaggatgacgatgatacagaggtggagcttgatgaagat
gaggatggcaacaatgacgacggcagtagtgacgcttatgataaagatgacgaagagaag
gaggaagaggaagaggaagaagaggctgaaaggagaaaactcaataatgggatttacaca
tctgatgatgacatgatcaatattactgttcctacctcaagatatgatatgttcgagaga
aaaaatatctcaagatatgatatgttcaagagaaaaaatacctcaagatatgatatcttc
aagagaaaaaatacctcgagatatgatattttcaagagaaaaaaaacctccagatatgat
attgagtgggtggaggatgaagataaagatgcaaatgttgatacgttacagccaatctcc
ttgaggaaaggtagcagctggaaccctgtggctgttggcaatgacacatttactgagcaa
caaaagcaatcacgatttacttggcagcttgagaggaggaaaaagaacaagcttgagatg
aagacaaatcctttgtatgagcgggatttgaactcagattcgaactcatcaggttctgac
cagatcagaaagtatggcttcaaacgtgatgggagtcataaagttgatatgaaaaagaag
catacatcgtccaaatcgggcaagaaatccagcagtgcaatcatgctaaagcgtcagtct
cttctgaagcttttggtagataaaatgagtggcgataaaagtttagaatctttttcattt
gatcagaatcctcagctccagttcattttcaaagaaatgcatccgttggtattttcattt
ggagatgaagatctagaagcagctgacaggccagaacaagatgttggattggatatgtta
tgggctgactttgactttgctttagagtctgagaatatcggcacttattatgatgatgag
ggtcaagaagaaggcaatcagctagatttttctcttgccccagtaacaccctgttctcgt
gggaagcatgaatttattattgatgatcgaatagggatcagatgcaaatactgttcctta
gtaaacctggagatcaaattcatgtttccatcattgatctcaggctttgctgagaaatct
gcatggccaaatgccaaaggtgtgaaggatacattgatgtttcatgatctttatgaacaa
acaggcagtgacattgaacaatctcaagatcttcatcaatatggaacagtgtggaatctt
attccaggggtcatcagtactatgtatgagcatcagcgtgaagcatttgaatttatgtgg
acaaatttagttggtggtattaggcttgatgagctaaagcatggagcaaaacctgatgtt
gttggtggatgtgtgatctgccatgctccaggaacaggaaagacacgattagctattgta
tttatccagacatacatgaaggtgtttccagactgccggccagtgattattgcaccacgt
gggatgctctttgcttgggatgaggagtttaagaaatggaatgttgatgttccttttcat
ataatgaacacaactgattacactggaaaagaggaccgggaaatatgcaagttaataaag
aaagaacacaggacggaaaagttgacaagactagtgaaactgctttcatggaacaaaggc
catggtattcttggaataagttatggcctgtacacaaaactgacatctgaaaaacctggc
tgcacagaagaaaacaaagtaagaagcattcttcttgataaccctggcttacttgttctt
gatgaaggacacacacctaggaatgagcgcagtatcatgtggaagactctaggaaaattg
aaaactgagaagcgtataattttatctggaactccttttcagaacaattttcttgagctt
tacaacattctttgtctggtaaggcctaggtttggtgaaatgtttttgacgaaaggaaga
gtgggtcgaaggcactatgtctcaaagaagcaaaaagataagttttctgataaatatgaa
aaaggagtttgggcttcactaactagcaatgtaactgatgataatgcagagaaagtgaga
tcaatattgaaaccatttgttcatatacataatggtaatattcttcgaactcttccaggg
ctcagagagagtgtgattattctgaagcctcttccccttcaaaagagtattattagaaag
gtggaaaacattggttctggtaacaactttgaacatgaatatgtcatttctttagcttct
acacacccttcccttgtaaccgccattaacatgtctgaggaggaagcttcacttattgat
aaacatatgcttggaaaattgagatcaaatccctatgaaggggtaaaaacaagatttgta
atggaagttgttcgtttgtgtgaagcattaagagagaaggttttgatttttagccaatat
attcagcctctagagttgataaaagagcatcttcgcaagttcttcaaatggagagaaggg
aaagaaattcttcaaatggatggaaagattcttccaagatatcgccaggcttccattgaa
gccttcaataatccaaataatgaatccagggtgttacttgcatctacaagagcatgctgt
gaagggattagcttgacaggtgcttcaagagttgtgcttctagatgttgtttggaaccca
gctgttggaaggcaagccatcagcagagcatttaggataggtcagaagaaatttgtatat
acatataatttgataacttatggaacaggtgaaggtgacaagtatgacagacaagcagaa
aaggatcacttatccaagttggtcttctctacagaagacgagttcaataatgttaggaac
atgctatctagagctgaaatggaccactgttctaagttgatttcagaagataaagttttg
gaggagatgacttcccacgatcaacttaaaggaatgtttttgaagatccattatccacca
accgagtcaaacattgtctatacttacaatcaaattactcctgagtga
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integrated database retrieval system
