Sorghum bicolor (sorghum): 8077045
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Entry
8077045 CDS
T01086
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8077045
03036 Chromosome and associated proteins [BR:
sbi03036
]
8077045
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
8077045
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
8077045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
Tex_central_region
HHH_9
SH2
Tex_N
SAM_1
LPD11
MRP-S34
Motif
Other DBs
NCBI-GeneID:
8077045
NCBI-ProteinID:
XP_021302520
LinkDB
All DBs
Position
9:53609090..53618975
Genome browser
AA seq
1648 aa
AA seq
DB search
MGRTVLSDEEEDEIEVDEEEDPRSSRRGRDDMDEHDDDDDDEDDEDGQDEFEKDDFIVDD
EEEEVEGEEEEQRSDDERRRKKKKKKRESEDFMLDEDDYMLLQDNNITGISRPKPGNKFK
RLKKAGRESEMDERSGFSDGDGTGKKRSGKERVEYSLFGDHQDTAPFEEDFEDDQQAGEG
EEEVGDDEDEMADFIVEEDEIDGNGQVVRRKKYKKKVPRQAAGVSSSALQEAQDIFGDVD
ELLALRKQELEREAANSSELRGARLEDEFEPFILAEKYMTTKDEQIKENDVPERMQLSEE
LTGYPPTDKTMIEEESLWIHSHLTGDGFLSFFGNERMNKDIDQKDIVNVVTMLHVNKFEI
PFIAMYRKENCPTLLKSLDSDEGNEDNEDNKDNESDARKMKWHKLLWAVQTLDRKWLLLQ
KRKVALQLYYEKRFDDEKRRIDDVTRQELNSQLYNSIIEALKDAKSEKEVEDVDAKFNLH
FPPGEVEEEGQFKRPKRKSLYSICHKAGLWEVANQFGRSAEQLGHHLTLTKIPEAGELES
GRHSPEEVAANFTCAMFETAQDVLRGARHMAAVEIGCEPIVRKHVRGIFMNKAVVSTSPT
PEGNTIIDPYHQLSGVKWLREKPLSKFVDAQWLLIQKAEEEKLLKVTVKLPEDAKKKLMS
EARENYLSDCVSKSAQLWDEQRKMILDDAFFNFLLPSMEKEARSLLTAKAKHWLHMEYGK
QLWNNVTVAPWKKKDADKKDADIDLDDESELRVMACCWGPGKPATTFVMLDSSGELVDVL
YAGSISNRSQGVAEQQRKKNDQQRVLKFMTDHQPHVVCVGASNYNCRQLKDDIYEVIFRI
VEDHPRDVNPQMENLSVVYGDESVPRLYENSRISSDQLPGQPGIVKRAVALGRYLQNPLA
MIATLCGPGKEILSWKLHALEQFLTPDEKYEVVEQVMVDATNQIGFDVNLAASHEWHFST
LQFIAGLGPRKASALQKDLVREGSIFSRKELVKPLGRKVFMNASGFLRVRRSGAAAASAQ
LIDLLEDTRIHPESYVLAKNLAKDVYVEDAQHEINEMDDDEQEMAIEHVREKPDWLRSLK
IEEYVKSISEEYRKLETLRDIRRELLSGFSDWRTPYTEPSPDDEFWMLSGETEDTISDGR
IVQVTVRNIQENKIICTFDSGLKAIVMADNYSDEGFDLESSQLREGDVLTGKIRNVNKNR
FMVYLTCKASEMRRRPFSRGDQDPYYHEQDMISQTVEDKARKQKELAKKHFKPRMIVHPH
FQNLTAEEAMQFLSDKEHGEKVIRPSSRGPSFLTLTLKIFDGVYAHKEITESGKDHKDIT
SLLRLGKTLTIDNETFEDLDEVIDRYVDPLVGHLKSMLSYRKFRKGLKNEVDEMLRAEKA
ENPMRIVYSFGISHEHPGTFILSYIRSTNPHHEYIGLYPKGFRFRKRDFDNIDRLVSYFQ
KNIDKPPPDAGPSMRNVAAMVPMKNSAWGSGGGGGGDANGGWRGDGSNDRDRPFSGRSGG
RFDSRNSSGGRGRGRGRGRGNFGNDDNGGGGWSGGGGGNSGGWTDNIGSGGGGWGTGGSG
GSSWGGGGTGGGSDAAGWGGGIGGDDSNRGGGSGWGSAASGADSAGGGNGAWGAAAGGSN
DSGWGSAKKAVPAQEGGSGWGSGGGSGW
NT seq
4947 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcacggtgctctccgatgaagaagaagatgagattgaggtcgacgaggaggag
gatccgcggtcttcccggaggggcagggacgatatggacgagcacgacgatgatgacgat
gatgaagatgacgaggatggtcaagatgaatttgagaaggatgacttcatagtggatgat
gaggaagaagaagtggaaggcgaggaagaggaacagagaagtgatgacgagaggcgtaga
aagaaaaagaaaaagaagagggaatcagaagacttcatgcttgatgaggatgactatatg
ttgctccaggataataacatcactggcatcagtcgcccaaagcctggaaacaagtttaag
cgcttgaaaaaggctggaagggaatctgaaatggatgagcgctctggtttttcagatggt
gatggaacagggaaaaaacgcagtggcaaggagagagtcgagtacagtttatttggtgat
catcaagatactgcgccgtttgaggaggactttgaggacgatcagcaggcaggggagggt
gaggaggaagttggcgatgatgaagatgaaatggcagattttattgtggaggaagatgaa
atcgatgggaatggacaagttgtaaggaggaagaaatataaaaagaaggtgccacggcaa
gcagcaggtgtatcgtcatctgctctgcaagaggcccaagacatttttggtgatgttgat
gagttgctagcactaagaaagcaagagcttgagagggaggctgctaactccagtgagtta
agaggggcgaggcttgaagatgagtttgagccatttattcttgcagagaagtatatgaca
acaaaagatgagcaaataaaagaaaatgatgtccctgagaggatgcagttgtctgaagag
ttgactgggtatcctccaacggataaaacgatgattgaggaagagagtttatggatacac
agccacctaactggtgatggatttctgtccttttttggcaatgagcgcatgaacaaggat
attgaccagaaggacattgttaacgtcgtgaccatgttgcatgtcaacaaatttgaaatt
ccattcattgcaatgtacagaaaagagaattgtccaaccctattaaaaagccttgattct
gatgagggtaatgaggataatgaggataataaggataatgaatctgatgcacgcaaaatg
aagtggcataagttgctctgggcagttcagaccttggacagaaagtggctacttcttcag
aagcgcaaggttgctttacagttgtattatgagaaaagatttgatgatgagaaacggagg
atagatgatgtcacgaggcaagaacttaatagccaactttataattccatcattgaagca
ctaaaggatgctaaatctgagaaagaggtggaggatgttgatgcaaaattcaatttacat
tttcctcctggggaagtagaagaagaaggccaatttaaacgtcctaaaaggaaatccttg
tacagtatctgtcacaaggcagggttatgggaggttgccaaccaatttgggcgcagtgct
gagcaattaggccaccatctgacattaactaagatacctgaagcaggcgagcttgagagc
ggtagacattctcctgaagaggttgctgcaaatttcacatgtgcaatgtttgaaacagca
caagatgttcttcggggtgcgagacacatggcagcagttgagataggttgtgagccaatt
gtgagaaagcatgttcgaggcatcttcatgaataaagcagttgtgtcaacaagtcccaca
cctgagggcaatacaatcatagatccatatcatcagctatcgggtgttaagtggttgaga
gagaaaccacttagcaagtttgtagatgcacagtggcttcttattcagaaagcagaggaa
gaaaagctcctcaaggttaccgtaaaattgccagaagatgcaaagaaaaaactcatgtct
gaagcacgtgagaattatctaagtgattgtgtcagcaagtctgcacaactgtgggatgag
caacggaagatgatactggatgatgccttcttcaatttccttcttccatcaatggaaaag
gaagctcgatcactgttgacggcaaaagccaaacattggctccatatggaatatgggaaa
cagttgtggaataatgttactgttgctccttggaagaagaaagatgcagacaagaaggat
gctgacattgatttggatgatgaatcggaattgagagttatggcctgctgctggggtcct
gggaagccagcaaccacctttgttatgttagactcctcaggagaattggttgatgttctg
tatgcgggttctatcagtaacaggtctcaaggtgtcgctgagcagcagcggaagaagaat
gaccagcaacgagtcttaaagtttatgactgatcatcaaccacatgttgtgtgtgtagga
gcatcaaactacaactgcagacaactcaaggatgatatttatgaggttatttttagaatt
gtagaggaccatccaagagacgttaacccccaaatggaaaatttgagcgttgtctatggt
gacgagtctgtgcctcgcttgtatgagaactctcgaatatcttcggatcaacttcctggg
cagccaggtattgtgaagcgggctgttgcgcttggacgttaccttcagaatccattggcg
atgatcgcaacactttgtggacctgggaaagagatactttcttggaaactgcacgcactg
gaacagtttctgactcctgatgagaagtatgaagttgttgagcaagtaatggttgatgca
acgaatcagataggttttgatgtcaatcttgctgctagccacgagtggcatttttctact
ctacaatttattgctggtttgggtccgcgcaaagcttcagctttgcagaaagatcttgta
agagagggatccatttttagtcgcaaggagcttgtcaaacctctaggcaggaaagtcttc
atgaatgcttctgggtttttacgtgttcggcggagtggtgctgccgccgccagtgctcaa
ctcattgatctgctcgaggatacaaggatccatcctgaatcatatgtattagcaaaaaat
ttggctaaggatgtctatgttgaggatgcacagcatgaaataaatgaaatggatgatgac
gagcaagagatggctattgagcatgttagagaaaagccagattggcttcgaagtcttaaa
attgaggaatatgttaagagcatttcagaagaataccgtaaattggaaactctgcgcgat
ataaggagagagcttctatctggtttttctgactggaggaccccctatactgagccaagc
ccagatgacgaattctggatgctttctggtgaaactgaagacaccatatctgatggaagg
attgttcaagtaactgttcgcaatatacaagagaacaaaataatttgcacctttgattct
ggtttgaaagccatagttatggcagacaactattctgatgagggttttgatctagaatca
tcacagttacgtgaaggtgatgtattaactggcaaaattcgaaacgtgaataaaaataga
ttcatggtttacctaacgtgcaaggctagtgagatgaggagaaggccattctccagaggt
gatcaggatccttactatcacgaacaagacatgatctcacaaactgtagaagataaggct
cggaaacaaaaggaacttgcaaagaagcatttcaagcccagaatgattgttcatccccac
tttcagaacctgacagccgaagaagccatgcagtttttgtcagataaagagcatggtgag
aaggtgatccggccaagttccaggggaccatcttttttgacacttactctgaaaattttt
gacggcgtttatgcacacaaggagataaccgaaagtggaaaggatcacaaagacatcaca
agtttgcttcgcctagggaaaacactaacaatcgacaatgaaacttttgaagacctcgat
gaggtcattgacagatatgtggacccattggtaggacacctgaagagcatgctctcttat
cgtaaattcagaaagggtttaaaaaatgaggttgatgagatgttaagggcagagaaagca
gagaaccctatgagaatagtgtatagttttggcatctctcatgaacatcctggcaccttt
atattgtcatatattaggagtacaaatccacatcacgagtatattggattatacccgaag
ggcttcagattcaggaagagagactttgacaacattgaccgccttgtttcctatttccag
aagaatatagacaaaccaccacctgatgctggaccatcaatgcgaaatgttgctgcaatg
gtacctatgaaaaactcagcttggggttctggtggtggtggtggtggggatgcaaacggt
ggttggagaggagatggtagtaatgatagggacagacctttctcgggcagatcaggaggg
aggtttgattcaaggaatagctctggtggtcgtggacgaggacgggggcgtggccggggt
aattttggcaatgacgataatggtggtggaggttggagtggaggtggtggtggcaacagt
ggaggatggactgataacattggcagcggtggaggcggatggggcacaggtggcagtggt
ggctcttcctggggtggtggtggtactggtggaggatctgatgccgctggctggggtgga
ggcattggaggcgatgacagcaaccgtggtggtggaagcggctggggatcagctgctagt
ggtgctgacagtgctggtggaggaaatggagcctggggagcagctgctggtggctctaat
gactcaggatggggtagcgccaaaaaggccgtcccagcacaggaaggtggaagcggctgg
gggtctggcggtggtagtggctggtga
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integrated database retrieval system
