Sorghum bicolor (sorghum): 8077090
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Entry
8077090 CDS
T01086
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8077090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbi03041
]
8077090
Spliceosome [BR:
sbi03041
]
Complex C
Other components
Step II factors
8077090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_IFT140_1st
eIF2A
Beta-prop_Vps41
Beta-prop_NWD2_C
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
8077090
NCBI-ProteinID:
XP_002467736
UniProt:
A0A921V0M0
C5WXK8
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Position
1:complement(63570332..63573654)
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AA seq
572 aa
AA seq
DB search
MDLLQSSYAPDGASSPEDSAAASSPDSSPLRLPSKSAAPAVDDTALALSSAASAARPLDP
SLHLVAFNPTADQLWAPILGPQHPHAPISSASGNRNHKLGHVEDAAVLPFLFDEQYNTFH
RFGYAADPSGLHIVGDAQTQAPEPDTVYNLAPSEHKRRRLLAKADNQEEPAPPEAKNPAS
EEWILHNKQSPWAGKKEAPPAELTDEQKQYAEAHAAKKAEKEARGEGKSERTEVVVKTTF
HGKEEKDYQGRSWITPPKDAKATNDHCYIPKRCVHEWVGHTKGVSAIRFFPKYGHLLLSA
SMDCKIKIWDVLGSRTCMRTYMGHSKAVRDISFSNDGSKFLSAGYDRNIQYWDTETGQVI
STFSTGKVPYVVKLNPDEDKQHILLAGMSDKKIVQWDMKSGQITQEYDQHLGAVNTITFV
DNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIALHPNSNWLAAQSLDNQILI
YSTKERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGSCWFWDWKSCRRFKTLK
CHNGVCIGCEWHPLETSKVATCGWDGVIKYWD
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggatctgctccagtcctcttacgcgccggacggcgcctcgtctccggaggactcggcg
gccgcgtcctcgccggattcctcgccgctccgccttccgtccaagtcggcggcccccgcc
gtcgacgacacggcgctcgcgctctcctccgctgcgtccgccgcccgcccgctcgaccct
tcgctccacctcgtcgccttcaaccccaccgccgaccagctctgggctcccatcctcggg
ccccagcacccccacgccccaatctcctccgcctccggcaaccgcaaccacaagcttggc
cacgttgaggacgccgcggtcctgccattcctattcgacgagcagtacaacaccttccac
cggttcggctacgccgccgacccctctggtctccacatcgtcggcgacgcccagacccag
gcgcccgagcccgacacagtctacaacctcgccccctccgagcacaagcgccgccgcctc
ctggccaaggcggacaaccaggaggagcccgcacccccggaggctaagaaccccgcctcc
gaggaatggatccttcacaacaagcagagtccctgggctgggaagaaggaagcgcctcct
gcggagctcaccgacgagcagaagcagtatgcggaggcacacgctgcgaagaaggccgag
aaggaggcccgcggcgaagggaagagcgagaggacagaggttgtggtcaagaccaccttc
cacgggaaggaggagaaggattaccagggacgctcctggatcacgccgcccaaggatgcc
aaggctaccaacgaccactgctacatccccaagaggtgtgtgcacgagtgggtcggccac
accaagggggtctcagccatcaggtttttcccgaagtatggacatttgctgctgtctgcg
agtatggattgcaagattaagatctgggatgttcttgggtcaaggacatgtatgcgtact
tatatggggcactcaaaggcggtaagggatatatcattctccaatgatgggagtaaattc
ttgagtgctgggtatgacaggaatatacagtactgggatactgaaacagggcaggtgatc
tcgaccttctcaactgggaaggtcccatatgttgtgaagctcaatcctgatgaggataag
cagcatattctccttgctggaatgagcgataagaagattgtgcaatgggatatgaagtca
gggcagattacacaagagtatgatcagcatttaggggctgtgaacaccataacttttgtg
gataacaacaggagatttgtgacctcgagtgatgacaagtctcttcgcgtgtgggagttt
ggcatccctgtggtgattaagtatatcagtgagccacacatgcactcaatgccatcaatt
gcattgcatcccaactccaattggctggcagcgcagagtttggacaatcagatactgata
tacagcaccaaggagaggtttcagcttaataagaagaagagatttgctggccatattgtg
gcaggttatgcttgtcaggtgaacttctcacctgatgggaggtttgtgatgtctggtgat
ggtgagggtagctgctggttctgggactggaaaagctgcaggagatttaagactttaaag
tgccacaacggagtttgcattggatgtgagtggcatccattggaaactagcaaggttgca
acctgtggatgggatggtgtaattaaatactgggactga
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integrated database retrieval system