Sorghum bicolor (sorghum): 8077336
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Entry
8077336 CDS
T01086
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
8077336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8077336
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8077336
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
8077336
RNA polymerase I system
8077336
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
8077336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW2_Spt5
Spt5-NGN
KOW4_SPT5
KOW6_SPT51-2
KOW7_SPT5
KOW
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
DUF4438
Ribosomal_L19
Motif
Other DBs
NCBI-GeneID:
8077336
NCBI-ProteinID:
XP_021305018
LinkDB
All DBs
Position
10:complement(6623404..6633539)
Genome browser
AA seq
1050 aa
AA seq
DB search
MARRGHDDDDEIEEEEDEEEAYDLDEEEEEDEEDDYEEEARRGKASRSGGAGGGKGGGGG
RKRSREDNFIDDSAIEDDDEEDDDDDGGGRPRKKGGGGVRGFFDEEAQVDEDEEEEDEGE
GEDDFINDAGADLPDEDVVRGSRRHSIPMRDEEEDIDEIERQVRERYARSTHIEYGEEAA
EVEQQALLPSVKDPKLWMVKCAIGHERETAICLMQKYIDRGDLQIKSVVALDHLKNYIYV
EAEKEAHVKEACKGLRNIYASAKITLVPIKEMADVLSVESKSVDLSRDSWVRMKLGIYKG
DLAKVVDVDNVRQRVDVKLIPRIDLQALASKLEGREAVKKKAFVPPPRFFNIDEAREMHI
RVERRRDKESGEYFEWVDNLKFKDGFLYKSVSTKSIHTNNIQPTFDELEKFKKPGEDMNG
DMASLSTLFANRKKGHFMKGDAVIVVKGDLKNLEGWVEKVEDETVHIRPKISDLPKTLAF
NEKELCKYFKPGDHVKVISGVQEGATGMVVKVEGHVLIILSDTTKEHIRVFADHVVESSE
ITTGITRIGDYELHDLVLLDNLSFGVIIRVEAEAFQVLKGVPDRPEVVLVKLREIKSKID
RRSSAKDRSNNIISAKDVVRVIEGACKGKQGPVEHIHKGILFIYDRHHLEHAGFICAKAQ
SCLLVGGSAGGRRGNGMDTADARLGALRSSASILQSPGRLPPRGPNMNYGGRFGGGRGGR
GHDALVGKCIKIKSGPYKGYRGRVKEVTGALVRVELDSLMKIVTVKRDDIADTPTVATPF
REPRYSLGGETPMHPSRTPHHAYQTPMRDPGATPIHDGMRTPMRSRAWAPMSPPRDNWED
GNPATWGSSPAYQPGTPQARPYEAPTPGSGWANTPGVSFNDAPTPRDNYANAPSPYVPST
PVGQPMTPNSAAYLPGTPGGQPMTPGTVGLDAMSPILGGEGDGTWLLPDVMVNVLRGGDD
GPGVVREVLGDGSCRVALGSSGNGDMVTVLPNEVEVIRPKKSDKIKILNGNFRGYTGKLI
GIDGSDGIVRLDDTYEVKILDMVILAKLAT
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggctcgacgcggccacgacgacgacgacgagatcgaggaggaggaggacgaggaggag
gcctacgacctggacgaggaggaagaggaggacgaggaagacgactacgaggaggaggcg
aggcgcgggaaggcctcccgcagcggcggcgccggcggcggcaaggggggcggcggtggg
cggaagcggtcgcgcgaagacaactttattgacgactcggccatcgaggacgacgacgag
gaggatgacgacgacgacggcgggggccggccgaggaagaaaggcggcggcggggtgcga
gggttcttcgacgaggaggctcaggtcgacgaggatgaggaagaagaggacgagggcgag
ggcgaggacgattttattaatgatgctggggccgaccttcctgatgaggatgttgttagg
ggctcaagacgtcattctattcctatgagggatgaagaagaggacattgatgagattgag
agacaagtgcgggagagatacgcaagatccactcatattgagtatggtgaggaagcagca
gaagtggaacagcaagctctgctgccctccgtgaaggatcctaaactatggatggtcaaa
tgtgcgattggacatgagagagagactgcaatttgtctgatgcaaaagtacatagatagg
ggagaccttcagataaagtcagtcgtggcattggatcatctaaaaaattatatttatgtt
gaagctgaaaaggaggcccatgtcaaagaggcttgcaaaggtctacgaaacatttatgct
tcagcaaaaataacattagtgccgataaaagaaatggcagatgtcctctctgttgagagc
aaatctgtcgatctttcaagggattcttgggtccgaatgaaattgggcatatataaaggt
gaccttgctaaggttgttgatgttgacaatgtacgtcaaagagtagatgtgaagctgatc
cctagaatagatctacaagctttggctagtaaactggaagggagggaggctgtaaagaag
aaagcatttgtcccaccaccacgattcttcaatatcgatgaggcgagggagatgcatatt
cgtgtggaacggaggcgagataaagaatctggggagtactttgagtgggttgataatttg
aagttcaaagatggtttcttgtacaaatcagtctccactaaatcaatccacacaaataat
attcaaccgactttcgatgagcttgagaagtttaagaagcctggtgaagacatgaatggc
gacatggctagcttgtccactctgtttgcaaacaggaaaaaagggcattttatgaagggt
gatgctgtcattgttgttaaaggcgatttgaaaaatctggaggggtgggttgagaaagta
gaggatgaaaccgttcacatcagaccaaaaatatctgatcttccgaaaacattagccttc
aatgaaaaggagctttgcaaatatttcaagcctggtgaccatgtcaaggtgatctccggt
gttcaagaaggtgctactggcatggttgttaaagtggaagggcatgtcttgataattttg
tctgacacaactaaagaacatatccgtgtgtttgctgatcatgtcgtcgaaagctctgaa
attaccacaggaatcaccagaattggtgattatgaactgcatgatcttgtccttttagac
aacttgtcatttggagtaattataagggtggaagctgaagcatttcaggttctgaaagga
gtgccagatagacctgaagttgtgctcgtgaaattaagagaaataaaaagcaaaattgat
aggcgctcatcagctaaagatcgttctaataatattatctctgcaaaggatgtcgtaagg
gttattgaaggagcatgcaaggggaagcaaggacctgtggaacacatacacaaggggata
ctgtttatctatgacaggcatcaccttgaacatgcaggctttatttgtgcaaaagcgcaa
tcttgccttcttgttggtggatctgctggtggccgtcgaggaaatggtatggacacagct
gatgcacggcttggtgctttgagatcttcagcaagcattctgcaatctccaggaaggctg
cccccaagaggacctaatatgaattatggtggaaggtttggaggcggccgtggtggtaga
ggacatgatgccttggtgggtaaatgtatcaaaattaaatctggcccttataagggatac
cgtggccgtgttaaagaggtgactggtgcactcgtacgtgtagagcttgattcattgatg
aagattgtcacagttaaaagagatgatattgctgacacacctactgttgcaacaccattc
cgtgagcctcgttattcattgggcggtgaaacaccaatgcacccgtctcgaacaccacat
catgcttatcagactccaatgcgtgaccctggagcaacaccaatacatgacgggatgcgg
actcccatgcgcagtcgagcctgggctcctatgagccctccgagggataattgggaagat
ggaaatcctgctacttggggtagcagtccagcttaccagccaggaaccccacaagctcgg
ccatatgaagcccccacacctggatcagggtgggcaaacactccaggagttagtttcaat
gatgcccctactcccagggataactatgcaaatgccccaagtccatatgtgccttccacg
cctgttggtcaaccaatgacaccaaactcggctgcatatcttccgggcacacctggtggt
caaccaatgacccctggcactgttggactggatgcaatgtccccgatactaggtggtgag
ggtgatggtacatggttgttgccggatgttatggtcaatgtattgaggggaggtgatgat
ggtcctggtgtggttagggaagtactcggggatggatcttgccgagttgcacttgggtcg
tcgggcaacggtgacatggtgacagtccttccaaacgaggtcgaggtcatcaggccaaag
aagagtgacaagatcaagatattgaatggtaatttccgtggatacacaggaaaactcata
ggtatagatggttctgacggaatagtgaggcttgacgacacatacgaagttaagatatta
gatatggtgattttggccaaactggcgacttga
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integrated database retrieval system
