Sorghum bicolor (sorghum): 8077388
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Entry
8077388 CDS
T01086
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03013
Nucleocytoplasmic transport
sbi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
8077388
03015 mRNA surveillance pathway
8077388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8077388
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
8077388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_occluded
DnaX_C
Motif
Other DBs
NCBI-GeneID:
8077388
NCBI-ProteinID:
XP_002456966
UniProt:
C5XIK9
A0A921UTE9
LinkDB
All DBs
Position
3:73542171..73547464
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AA seq
428 aa
AA seq
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MAKPRRGRSASRSSSGSSSRSPSHSVSSGSVSSRSRSRSRSFSSSSSQSRSRSPPPAKRG
SPGARKGRSPSPPPKKGSPSKKVRSPSPPPKKASPPRKASPAESAVLCIDHLSRNVNEAH
LKEIFGNFGEIVNVELSMDRMVNLPRGYGYIEFKKRADAEKALLYMDGGQIDGNVVKLRF
TLQPRQRAASPMKAPPPPPKRDAPQIEKGVTSAEKDAQQRPRESSPRRKPASPPRKRSPN
RRAESPRRPPDPSPRRRPDSPPIRRRPDPSPVRRGDTPPRRRPLSPVRRRSPSPPPRRHR
SPMRPSPRRGRGSPSPRRRSPGPLRRRSPPPRRLRSPPRRPPPPRRYSRSPPRRPLRSRS
RSISPRRGRGPPLRRGRSDSSYSRSPTPPPRKGPRRVSRSRSPRRPPRGRSISSDSRSSS
SPSPRRGR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcctcggcgcggccgctccgcgtctcgctcctcctcgggctcttcctcccgc
tcgccgtcccactccgtctcctccggctccgtctcgtcgcgctcgcggtcgcgctcccgc
tccttctcgtcgtcgtcctcgcagtcccggagccgctctcctcctccggctaagcgcggt
tcgcctggagcacggaaaggccgatcaccttcaccgccccctaaaaagggttcaccctca
aagaaagtccgttcgccatcaccaccacctaaaaaggcttcaccccctaggaaagcgtct
cctgctgagtcagctgttctctgcattgatcatttatcaaggaatgttaatgaggctcac
ttgaaagaaatatttggaaactttggtgaaatagtgaatgtggagctttcaatggaccga
atggttaaccttcctcgtggctatggatatattgaattcaagaagagagctgacgctgag
aaggctcttctttacatggatggtggtcaaattgatggaaacgttgttaagttgagattc
actcttcaaccacgccaaagggctgcatcacctatgaaagctccgccccctcctccaaaa
agagatgctccccagattgaaaaaggtgttaccagtgctgaaaaggatgcccagcagcgt
cctagggaatcatctccacgaaggaagccagcttcacctccacggaaacgatctccaaat
cgaagggctgaatcacccaggcgtccacctgacccatcacctaggcgtcgtcctgattct
ccgcctattcgtcgccgaccagatccttctcctgtcaggcgtggggacacacctcctcgc
aggagaccactgtctccagttagaaggcgttctccttctccaccacctaggaggcatagg
tcaccgatgcgtccttcacctaggaggggacgtggcagcccgtcaccacgcaggcgctcc
cctgggcctcttaggcggcggtcgccacctccaaggcggttgaggagcccaccaagaagg
ccgccacctccacgtcgctatagtcgctctcctcctcgccgaccccttcgctcccgctcc
agatcaatttctccaagaaggggacgagggcctccgttgaggcgtggtaggtcagactca
tcatattctcgatcacctactccaccgccaagaaaggggccaagaagggtatcaaggagc
cgcagccctagaaggcctcctagaggaagaagcatctctagtgacagccgaagcagcagt
tcaccttcccctagacgcggcaggtag
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