Sorghum bicolor (sorghum): 8077525
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Entry
8077525 CDS
T01086
Name
(RefSeq) uncharacterized protein LOC8077525 isoform X1
KO
K06100
symplekin
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8077525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8077525
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8077525
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
8077525
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
8077525
U7-dependent histone pre-mRNA processing factors
8077525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
HEAT
HEAT_EZ
Med28
Motif
Other DBs
NCBI-GeneID:
8077525
NCBI-ProteinID:
XP_021310546
LinkDB
All DBs
Position
2:77590090..77601280
Genome browser
AA seq
1243 aa
AA seq
DB search
MLAARNPPPPPHDIAARLHHLRDLRRVPLPNRVARIADLHTDEASPVRKLVAEIIGELGS
KHMAYLPDMIPCLLHLLNDETPAVVRQAVKTGTNLFSKVLQKLVIQGLFSTGGIDDALKL
SWEWLLKFKSVVSHMAFQATGNEGVRLLAVKFVEKTVLMYTPDPNVPSDPPTETTEVMGF
NVAWLRAGGHPLLNVGDLAMEASQSLGLLLEQLKYPKVKSLSTSMIIVFITSLSAIAQTR
PSFYGRILPVLLSLDPASSIIKLRVPGAFHALKSAFSACLKCTHSSAEPWRERLLEAQNI
VNQGDSREDAANAAKNFGDTSNREESWLLMERSTDGSNKRSLAEDMNHMTEDDLHSPKRA
RQSFDANEHSEGANKRNVESTSVDISSSQPSSIRTGNSEAVYQLIGMFAALAAQGDRAAG
SLQILSSSIASDLLAEVVMVNMQHLPISRPEVDQQQLPSTSSGDGLPLSSFFSLLGTLLK
RANQIDQDEVSPTKESAVVSSVADDIMTVPASSPVPSSVNLPIEENTNSPTVPLCIETTE
AKVSSAGGNSSIDIPESSEASHASTELQGTQEHASTFVSSFPADNSSAGFSLAQSSETRS
PSSSTVEANHSQLSSLSSQYVLPKLVVNNIDLSDEAKDLLQKEAFVRILESDKQEASGGS
IARLPLLAHLGVEFPLELDPWEILQKHVLSDYANNEGHELTICILNRLYREAEQDQDFLS
STTATSVYESFLLNIAENLRDMFPASDKSLGKLLCEIPYLPEGVLKLLEGLCSPGSNEKQ
DKDIQSGDRVTQGLSAVWNLIMLRPSNRDRCLEIALQSSTHHLEEVRMKAIRLVANKLFP
MASISKKIEDFANEKLNSVLEVIPSGDSATTEMATPQAHKDVGLENLTAPVADAQTLMSL
YFALCTKKHSLLRHVFAIYGNLPQAAKQAVHRQVPILIRTIGSSSDLLGIISDPPADCWD
LLMQVLQTLTDAAVPSKDLISSIKILYSKTKDVEVLFAILAHLPKDEVLPVFPSIVNLPI
DKFQGAISRILQGSPRTGPSLDPSEILIAIHVIDPDKEGIPLKKVMDACSSCFEQRTIFT
QQVLAKALNQLVEQIPLPLLFMRTVMQAIGVFPALVDFVMEIMSRLVSKQIWKYPKLWVG
FLKCAILTKPQSYGVLLQLPAPQLENALSKNPTLKAPLAEHAEQPNIRSTLPRSTLVVLG
LAEDQPQQPAAAQAQSSQNQAVETSSSAADTATEVTQESSAAS
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgctggccgcccggaacccccctccgccgccccatgacattgccgcgcgcctccaccac
ctgcgcgacctccgcagggtgccgctccccaaccgcgtcgcgcgcatcgccgacctccac
accgatgaggccagccccgtgcgcaagctggtcgccgagatcattggtgagcttgggtca
aaacacatggcgtatctacctgatatgatcccttgtttgctgcaccttctgaatgatgag
acacctgcagtcgtcaggcaagctgttaagacaggaaccaacttgttttccaaagtactc
caaaagctagttatccagggtttattctccactggagggattgatgatgcacttaaattg
tcatgggaatggcttctcaagttcaaatcagttgtctcgcacatggcatttcaggccacc
ggcaatgaaggtgtcaggttactggctgttaagtttgttgaaaaaacagttcttatgtac
acaccagatcctaatgtcccatctgatccgccaactgaaactacagaagttatgggattc
aatgtagcttggttacgagcaggaggtcaccctctgcttaatgttggggatctggccatg
gaagccagccagagtcttggattgttgctagagcaactcaagtatcctaaagtaaagtca
ctcagtacttccatgatcatcgtcttcattactagtctctcagctattgcccaaacaagg
ccttccttttatggacgcatactgccagttttactttccttggatccagcaagttctatt
attaaattgagagtcccgggtgcattccatgccttgaagagtgccttctccgcatgcctg
aaatgcacacattcaagtgctgagccgtggcgagaacggctattggaagctcaaaatatt
gtcaaccagggggattcaagagaagatgcagcaaatgctgctaagaattttggggacaca
tcaaacagggaagaatcgtggcttctgatggagagaagcactgacggtagtaacaagcgt
agtctggctgaagacatgaatcatatgacagaagatgatctccactcccctaaaagagcc
aggcaatcatttgatgctaatgaacacagtgaaggggcaaacaagagaaatgttgagtcg
acatctgttgatatctcatctagccagcccagctctataagaactgggaattcagaagct
gtgtatcaattaattggtatgtttgctgcactagctgcacaaggtgacagagcagctgga
tcactgcaaatcctttcgtccagtatcgctagtgacttactagcggaggtggtaatggtt
aacatgcaacatctcccaatttctcgtcctgaagttgaccaacagcagcttccttctacg
agctctggagatggacttccattatcaagtttcttctctctgttagggactctactgaag
agagcgaaccaaattgatcaagatgaagtgtctccaactaaagaatctgcggtggtgtca
tctgttgctgatgacatcatgacagttcctgctagttcacctgttcctagctcagtaaat
ctacctatcgaagagaacactaacagtccaacagttccattatgtatagaaacaacagag
gccaaagtaagcagtgcaggtggcaatagttcgattgatattccagaatcatcagaagct
tcccatgcctcaacagagctccagggaacccaagagcatgctagcacttttgtcagttca
tttcctgctgataattcctcagctgggtttagtttggcacaatcatcagaaactcgcagc
ccaagctcttctacagtggaagcaaaccactcgcaactttcatcccttagttcacaatat
gttcttccgaagttggttgtcaataatattgatctcagtgatgaggccaaagatctcctt
caaaaagaggcatttgtgcggattcttgagagtgataagcaagaagcatctggtggttca
attgctcgccttccgttgcttgctcacttgggtgtcgagtttcctctggaattggaccct
tgggagattctccaaaagcacgtgctctctgattatgcgaataatgaggggcacgagttg
actatatgcatcctgaaccggttatatcgtgaggcagagcaggatcaagattttctttca
tctacaactgctacatcagtttatgaatcctttcttctaaacatagctgaaaatcttcga
gacatgtttccagcttcagataagtcacttggcaaattgctttgtgagataccatactta
ccagaaggtgtgctgaaactgctcgaaggtttatgttctcctggaagtaatgagaagcag
gataaggatattcagagtggtgacagggtaactcaaggtctcagtgctgtctggaacctt
atcatgctaagaccttcaaatcgggacagatgtctggagattgctttgcagagttcaact
catcatctagaggaggtccgcatgaaggcaatacgtttggtggcaaataagttatttccc
atggcaagcatttccaaaaagattgaagattttgcaaatgaaaaactaaattcagtgctg
gaagtgattccatctggtgattctgcaactactgaaatggctacacctcaagcacacaaa
gatgttggtttggaaaacttaacagctccagtggcagacgcgcaaactctgatgtctcta
tactttgcattgtgcaccaagaaacattcccttctcagacatgtatttgcaatatatggt
aatctaccgcaagctgccaagcaggcagttcatcgacaagtaccaattctgatacgcaca
ataggctcctcctctgatcttcttgggatcatctcagatccaccagctgactgctgggac
ctcctcatgcaggttttacaaaccctcactgatgctgcggttccgtccaaagatctgatt
tcttccataaagatcttatattctaaaacaaaggatgttgaggtcctttttgcaatcttg
gctcatctaccaaaagatgaggttctgcctgtgttccccagtattgttaatcttccaata
gacaagtttcaaggtgccatttcccgaatcttgcagggatcacctcggactggcccttcg
cttgatccatcagaaattttaattgcaattcatgtaatagatcctgataaggaaggaata
ccactcaaaaaggttatggatgcatgctcttcttgctttgagcaaagaacaatatttacc
cagcaagttctggcaaaagcactaaatcaactggttgagcagattcctcttcctttgcta
ttcatgaggactgtcatgcaagcaataggtgtttttcctgcattggtggattttgtgatg
gagatcatgtcacgccttgtgagcaagcagatttggaaatatcccaagttatgggtagga
ttcctgaagtgtgctatcttgacaaaacctcagtcatatggtgtgttactgcagttacca
gctcctcaacttgagaatgccttgagtaagaatccgacactgaaggcacccttggctgag
catgccgagcagccgaatattcgatcaactcttccaaggtctaccttggtggttctgggt
ctcgctgaagatcaaccacagcaaccagcagcagcacaagcacagagcagccaaaaccag
gctgtggaaaccagtagctctgctgcggatacggctacagaagtaactcaggaatcttct
gctgctagctag
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