Sorghum bicolor (sorghum): 8077679
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Entry
8077679 CDS
T01086
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8077679
09123 Folding, sorting and degradation
03018 RNA degradation
8077679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8077679
03041 Spliceosome [BR:
sbi03041
]
8077679
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8077679
mRNA degradation factors
5'-3' decay
Lsm complex
8077679
Spliceosome [BR:
sbi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
8077679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
8077679
NCBI-ProteinID:
XP_002448604
UniProt:
A0A921QUW3
C5YGR1
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All DBs
Position
6:complement(57457672..57460100)
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AA seq
98 aa
AA seq
DB search
MAGRKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKL
SGKTRQLGLIVCRGTAVMLVSPTDGTDEIANPFLADGA
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggctgggcgcaaggagaccgctctcgacttggcgaagttcgtcgacaagggcgtccag
gtgaagctcaccggcggccgccaagttacaggaactctaaagggatatgaccagcttctc
aacttagtgctagatgaagcagttgagtctgaaagagagcaagatgatccattgaagcta
tcagggaaaaccagacagcttggcctcattgtgtgcagaggcacggcagtcatgctggtc
tcaccgaccgatggaactgatgagatcgccaaccctttccttgcggacggagcataa
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