Sorghum bicolor (sorghum): 8077842
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Entry
8077842 CDS
T01086
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8077842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8077842
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8077842
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
8077842
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
8077842
NCBI-ProteinID:
XP_002444415
UniProt:
A0A921QK87
C5YLK4
LinkDB
All DBs
Position
7:56956239..56957597
Genome browser
AA seq
286 aa
AA seq
DB search
MAASPPAAEGPDAVEIREVWAGNLEEEFAVIRAVVDAYPYVAMDTEFPGFVVKPSAEYRF
TCDRNYAALEGNVNVLKLIQLGLTLSNGAGALPPCGTGGRGCIWQFNFRGFDPHTDPSSN
DSIDLLRRSGIDFDRFAAEGVDSTRFAELMMSSGIVLNDDVQWVTFHSGHDFGYLLRLLT
GREMPNTLDEFLKLTKTFFPVLYDIKHLMKFCGGGLYGGLSKLGELLKVERVGIGHQAGS
DSLLTLQCFMKLKQLYLNESVKLYDGVLFGLIPGEVEIKPAAPPIE
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctctccgcccgccgccgagggccccgacgccgtggagatccgcgaagtctgg
gcggggaacctggaggaggagttcgcggtgatccgcgccgtcgtcgacgcgtacccgtac
gtcgccatggacacggagttccccggcttcgtggtcaagcccagcgccgagtaccggttc
acctgcgaccgcaactacgccgccctcgagggcaacgtcaacgtgctcaagctcatccag
cttggcctcaccctctccaacggggcgggtgcgctcccgccgtgcggcacgggggggcgg
ggctgcatctggcagttcaacttccggggcttcgacccgcacaccgacccttccagcaac
gactccatcgacctgctccgccgcagtggcatcgacttcgaccgctttgcggccgagggg
gtcgattccacccgcttcgccgagctgatgatgtcgtctggtatcgtgctgaacgacgat
gtccagtgggtcaccttccatagtggccacgacttcggctacctcctcaggctgctcacc
ggacgggaaatgcccaacaccttggatgagttcctgaagctcaccaagaccttcttcccg
gtgctgtacgacatcaagcatctcatgaagttctgtggcggtggcctgtatggtgggctg
agcaaacttggggagctgctcaaggtcgagcgtgttgggatcggccaccaggctggttct
gattcgctgctgaccctgcagtgcttcatgaagctcaagcagttgtacttaaatgagtct
gtcaagttgtatgatggtgtgttgtttgggcttattcctggggaagtggagatcaaacct
gctgctccgcccattgaatga
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