Sorghum bicolor (sorghum): 8078098
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Entry
8078098 CDS
T01086
Name
(RefSeq) tRNase Z TRZ3, mitochondrial
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbi03016
]
8078098
Enzymes [BR:
sbi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
8078098
Transfer RNA biogenesis [BR:
sbi03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
8078098
Prokaryotic type
8078098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_4
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
8078098
NCBI-ProteinID:
XP_002457067
LinkDB
All DBs
Position
3:complement(546493..560874)
Genome browser
AA seq
1549 aa
AA seq
DB search
MPQVAAPLRRLLPLSQTLASAPAPLLHLSRRLLSSCSPASFGRAASLRALAYRRRRHPEP
RRGSSTLGKAPAKEEMDREVAFNRKRAEGKDGGKRGTMELKARRLNPVNTTCYVQILGTG
MDTQDTSPSILLFFDKQRFIFNAGEGLQRFCTEHKIKLSKIDHIFLTRVCSETAGGLPGL
VLTLAGIGDEGMSVNIWGPSDLDFLAGAMRSFIPNRAMLHTHSFGTDRNASSPQSKESII
ILDDEVVRISAMFVKPRYHNGTGSSNDSDMKPGDTAIVYACELPEIKGKFDPSKAAALGL
RPGPKYRELQLGNSVQSDQFDEMVHPSDVLGPSIPGPTVLLVDCPTQYHMPELFSLQPLS
CFYEDSPEQSGKKVNCIIHLGPSSVTRSVDYQNWMKKFGATQHIMAGHEIKNMEIPILKG
SARISSRLNFVCPQLFPSSGFWSVQPPNDVMENDKNASLEACGSVSAQNLLKFHLRPYAQ
LGLDRASIPNLFTYKDIVQELVSEIPEVSEVPEQVCKFWQNNVNDKNTLPPTGNRMVEEP
WINQKSDKLDDGASFQEIVWGKYPRGNQETPCCVEDATREDMEITFLGTGSSQPSKYRNV
SSIYINLFARGGILLDCGEGTLGQLKRRFGVNGADEAVKGLRCIWISHIHADHHTGLARI
LALRSKLLRGMPHKPLLVIGPRPLERFLNAYSTLEDLDMQFLDCRHTLKSSVEAFLSEND
SEPAIPQLANTIFAPGSRMENYNRKPASPRDTTALANFKEVLQESGLEILYSVPVLHCPQ
AFGVVFRAMEKTNSTGKVIPGWKVVYSGDTRPCPALIDASRDATVLIHEATFEDSMKDEA
IARNHSTTKEAIEVGTSAGAYRIILTHFSQRYPKIPVIDEVDMEKTCIAFDLMSVNLADL
PVVPKVLPHLKVLFKDELVVDEADELQEAAALRLIKYAVGKSGTDFKREMQRHSVAMRQL
VHYKGHPDPLRGDALNKAVRETANEAIAAIFSTEDPKPAVATESLGKRIQGFGNTNYEPS
RDDKKSFLSELTEVVGIGSASIKQGLSNFAAAHAMMTNDNGSTYKSPNLRRSLTTESERY
GRYDPSEIQSESRASSGASKNAASGSWGPTSSSVPTDDTSSSQPGIKTREERLLETIVTA
SGVRLQPTRDALQIFLTEASKLDAVALSRALENKLNSPLWQVRMKAICVLEAIVRKQDSD
PYSIITSYFIENTASVIKCSELPQVSLREKASKVLNMLIGEQPTGTTTTKAAVSIPVQMP
DLIDTGDQDDLATSSGQESNEQNTGNSAYVSSVDDLLGGEPIADTSVAADSNGSDPFADV
SFHEAETKETNDLFSGLTVEEKSSATVHDSSSSNKNELPDIFGSAPDSFIHGSVTDQGTV
NDLMAGLNLNGTGQAQSAVKAEPSSNFSGSQFFDTNNETSHVASAAALNGILGQNSFYQQ
QQTPLQYNFPQHMMINQSFPGQQLNYGAMGILLAQQQQLLQNLGNFNAGLGNSSFNSMHS
GNASVLPDIFNSSNQPQNHVAVMSSSKKDDTKAFDFVSDHLAAARGSRK
NT seq
4650 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggtggccgcccctctccgccgcctcctccccctctcccaaaccctagcgtcg
gcccccgcgcctctcctccacctctcgcgccgccttctctcctcctgctcccccgcctcc
ttcggccgcgccgccagcctccgcgccctcgcctaccgccgccgccggcaccccgagcct
cgccgtgggagcagcactctcgggaaggcgcccgccaaggaggagatggacagggaggtg
gcgttcaataggaagcgggccgaggggaaggacggcgggaagcgcggcaccatggagctc
aaggcccgcaggctcaaccccgtcaacaccacatgctacgtgcagatacttggtacagga
atggacacacaggacacttcaccttctattttactcttctttgacaagcaaaggtttatt
tttaatgcgggcgagggtcttcaacgtttctgtactgaacacaagataaaactatcaaaa
attgaccatatctttttgactcgcgtgtgctcagaaactgcaggtggccttccaggcctg
gtgctaactctagcaggaattggagatgagggcatgtcggtgaacatatggggaccttct
gatcttgactttttagctggggcaatgagatcttttatcccaaatagagcaatgcttcac
acacacagctttggtactgaccgaaatgcatcttcaccacaatctaaagagtccattatt
attcttgatgatgaagtagttcggatatcggcaatgtttgtcaaaccaaggtatcataat
ggaactggtagttcaaatgatagtgacatgaagcctggtgatactgctatagtatatgcc
tgtgagttgccagaaattaagggaaagtttgacccatctaaggctgctgcccttggcctt
aggcctgggcccaagtaccgtgaacttcaacttgggaattctgtgcagtctgatcaattt
gatgaaatggttcatccaagtgatgttcttggtccgtcaattcctggaccaactgttctt
ctggtggattgccccacacagtatcatatgccagaacttttttcactgcaaccccttagc
tgcttttatgaagattctccagagcaaagtggcaagaaagtaaattgcataatccactta
ggtccatcatctgtgactagatctgttgactatcagaactggatgaaaaaatttggcgca
acacaacatatcatggcaggacatgaaattaaaaatatggaaattcctatcttgaaaggt
agtgcaaggatatcatcacgcctcaattttgtatgccctcagctcttcccatcctctgga
ttttggtctgtacaacctccaaatgatgtcatggagaatgataagaatgcttcattggaa
gcctgtggaagtgtgtctgcgcaaaacctactaaagtttcatctgcgtccatatgctcaa
ctgggtttggatagagcttctattccaaacttgttcacctacaaggatattgtacaagag
cttgtatctgagatcccagaggttagtgaagttcctgaacaggtttgcaaattctggcaa
aataatgtgaatgataaaaatacactaccaccaactggcaatcgtatggttgaagaacca
tggatcaatcaaaaatcagataagctagatgatggcgcttcttttcaagaaattgtctgg
ggaaagtatccaaggggcaatcaggagaccccttgttgtgtggaggatgcaacaagggaa
gatatggagatcacttttttgggtacaggttcatctcagccttcaaaataccggaacgta
agttccatatatattaacttatttgcacgaggaggtatacttctggactgcggtgaagga
actttaggacaactgaaaaggagatttggtgtaaatggtgctgatgaagctgtaaaaggt
ttgaggtgtatttggatctcccatattcatgctgatcaccacactggcttggctagaatt
cttgctctaaggtctaagttgttaagagggatgcctcataaacccttgcttgtgattgga
ccaaggccacttgagagattcttaaatgcatattcgacgcttgaagatcttgatatgcag
ttcctagactgcagacatactttgaagtctagtgttgaggcctttctcagtgaaaatgat
tctgaaccagccatacctcaactggcgaacacaatatttgcccctggaagtagaatggag
aactacaacaggaagcctgcaagtccaagggataccacagctcttgctaatttcaaagaa
gttctacaggaatcaggtttagagattttgtatagtgtccctgtactacactgtccacag
gcatttggagttgttttcagggccatggagaaaacaaacagcactggaaaggtaattcca
ggctggaaggttgtatattctggcgacacgcgaccctgcccagctcttatagatgcatcc
agagatgccacagtgctaatacatgaggcaacatttgaggacagtatgaaggatgaagcg
atcgcgaggaaccatagtacaaccaaggaggccatagaagtaggcacatcggctggagct
taccggataattctgacccacttcagccagcgataccccaaaatcccagttatcgacgag
gtcgatatggagaagacctgcattgcctttgacctgatgagtgtaaaccttgcggatctg
ccagttgtgcccaaggttctaccacacctgaaggtcctgttcaaggacgagctggtagtt
gacgaggccgatgagctccaagaggctgctgctttacggttgatcaaatacgcagttgga
aaatccggtactgatttcaagagggagatgcaaaggcactcagtggctatgcgccagcta
gttcattacaaaggccaccctgatcccttaagaggggatgcccttaacaaggctgttcgc
gaaactgcaaatgaggctatagctgcaattttctccacagaggaccctaaacctgctgtc
gcaaccgaaagtcttggcaagcgcatacagggctttggaaatactaattacgagccatct
agagatgacaagaagtctttccttagtgaactaaccgaggtagtgggtattggaagtgca
tccatcaagcagggtttgagcaactttgctgcagcgcatgcaatgatgacaaatgacaat
ggtagcacgtacaagagccctaatctccgtagatctttgaccacagaatctgaaagatat
ggtcggtatgatccaagtgaaattcaaagtgagagccgtgcctcatctggtgcttcaaag
aatgcagcctctggttcttggggtccaacttccagttctgtaccaactgatgatactagc
tcaagtcaaccagggattaaaactcgtgaagaaagacttctggagacaatagttactgca
agtggcgtgagactgcaaccaacgcgagatgctttgcaaatttttttaacagaagcttcc
aaattggatgcagttgccttgagccgtgcacttgagaacaagctgaattctccattatgg
caggttcgcatgaaggctatttgtgtgttggaagccattgtaaggaaacaggattctgat
ccttattctatcatcacttcatatttcattgagaacacagcttctgttattaaatgctcc
gagctgccacaggtttctctcagagagaaggcctcaaaggtcttgaatatgctgattggg
gaacagcctactggaaccacaacaacaaaagctgctgtgtccatacctgttcagatgcct
gatttgattgatacaggtgatcaagatgatctagcaacaagttccggacaggaaagcaat
gaacagaatactgggaacagtgcatatgtttcttcagttgatgatttgcttggtggtgaa
cctattgctgatacaagtgttgctgctgatagtaatggaagcgatccatttgcagatgta
tcattccatgaggcagagactaaggagactaatgatctgttctcagggttgacagtagaa
gagaaatcatcagctactgtgcatgatagttcttcatcaaacaaaaatgaattaccagac
atctttggcagcgcccctgattctttcatccatggtagtgttactgaccaaggaactgtc
aatgatttgatggctggtttgaaccttaatggaacaggccaggctcagtctgcagttaaa
gcagagcccagtagcaacttcagtggttcacagttctttgatacaaacaacgagaccagc
catgtggcaagtgctgcagcattgaatggcattcttggtcaaaattcattttaccaacag
cagcagactcccttgcagtacaacttccctcaacatatgatgatcaatcaatcatttcct
gggcaacaattaaactatggtgccatggggattcttcttgctcagcagcagcagttactg
caaaatcttggaaatttcaatgctggacttgggaattcttctttcaattcgatgcacagt
ggaaatgcatctgtgcttccagatattttcaattcaagtaatcaacctcaaaatcatgtt
gcagtgatgagcagttcgaagaaagatgacactaaagcttttgattttgtttcggatcac
cttgcagcagcacgtggttcaagaaagtga
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integrated database retrieval system
