Sorghum bicolor (sorghum): 8078224
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Entry
8078224 CDS
T01086
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sbi03009
]
8078224
Ribosome biogenesis [BR:
sbi03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
8078224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
CEP104-like_TOG
INTS5_N
Motif
Other DBs
NCBI-GeneID:
8078224
NCBI-ProteinID:
XP_021310901
LinkDB
All DBs
Position
3:52629735..52647893
Genome browser
AA seq
2697 aa
AA seq
DB search
MATPSYAAVKCLNTSSSSRKRFSFKSFSQRVEEIDIDVYRSLHTLKAEPSSGSSFFLDAI
VEWRELNTAEDFISFYEEMIPLVQTLPQIVLHREKLFSALVQRVNMSARLSLEPILMLIA
ALSRDILEDFLPFLGRHASALLSLLNDGGDRDPEILEQVFTSWSYIMMYLQKYLVKDTVQ
ILRITAALRYFPKDYVREFMAESVSFLLRNAPNNQLTQGLLKVLFDAAKQPSPTRIDGVV
SLLWHVMKGTFTKLHSKAGQVLKFLLSKSVVSTLRDKYPDGSSTIHEVMTGLIQRLCDEV
DPKELPLMYTCLFEEINCCLKDGCLEHLKCLIDFLAFALQKKQSNVFDKVKMIKLVEVLV
NRYVLPCSNITEASSSEVLGSILDFLLSVLDVPTISGNLSIVSPFYAPVFKLTNPSVIVF
IKKLLATGPQVTQHFESQILSAMDNFIASSPEDVIFILLNFFKGSKKQICLRSTDGNHLD
SVEKTYKFFESKFSFWIELLDDTVSTGNRSSNNQVSEKEAAILWGSICCYPNMKGVHQDG
LSLLRKLIFNFDRLLEVGEENMNGLPMTTWRSLLGAALSSYHELLLVNTSRNSEFSFFIS
IAKSHSTCPQVLSAVAEYLDSLQGLPSLEVTKEFDPQNLLDLFSIFAVNLSSPSKNVRIL
TLRILSYFVKMDKRLITDEERPHKRQRTEVSGEEAVAKYANVVDTLLIIESTPISVSTSR
KIAIFISRIQMSLSSKMVHDDYIPPLLHGIIGILYNRFSDLWPPTLDCLAVLIRQHKELV
WGQFVQFIAIHQSKGLTVKNQEKLEAATQPQSIFDCFNLYLAMDFDCTPAETMATLLLQS
LQRIPDVAESRSRHLIPLFLSFMGYDDGSVFSADSYMPEKCKGKQWKVILKEWLNLLRLM
HNARSLYQSKFLQEVLTKRVLDESDPDIQAKALDCLLNWKDEFLTPYSQNLKNLIDVKTL
REELTTWAVSHDSSSILKDHRSRVVPLVIRVLAPKVRKLKLLGSRKHTGVSHRKAILRFL
LQLDSNELELFFSLLLRSLIPGGLQLKMFGSQSDNLLGNFTDIVGTSTEICVENFTWKKA
NGFIHLVEEIFGTFDMAHISPFLNVLLIIVARLLESCMRNLRSGSDGKYPCNQSNDHDND
CSINSEVGNSVNLDESRKEMHLGDHMEEPHSFMQTSVSIKQLKDLRSSCIRIVSSALSHF
ESHEFGENFWNIFFSSVKPLVDCFTQEASSSEKPSSLFACFMAMSGSPKLAPLLGSNNLV
PAIFSILTVKTASGSITTYALEFIENLLRLDVDLQQQDDHSVKNVLLPHMDVLIHSLHDF
VNHRKELNRRSGTWLGQRELRLFKLLLNYITDPSAADNFIDLILPFFSKKDLNSDDCLEA
LCVVRGIIQNLRCKVSVKVLNALNPLLAIVGLELRLCICDIYAELSLHDPSMLFLAGFIR
DLNAVSASELGELDYDTRLNTYDKVRPQLFLGLTEEHVGAILSHCVYDMSSEELILRQSA
SRALQSFLDFSASVMNDDLSKFSIDDKSRENNTRSICTMGCIQKILEKTYLHNMGVAMTK
DISIQKEWVILLREMVSNFNHLASLRSFRPLCKEDMEDDFFHNITHLQAGKRSKALSLFR
QGIKENNFSEDITMKVFVPLFFNMFSDVKAGKGEQVRDVCLDTLSAVAAKVQWEHYRTIL
KRCFQELNLRPDKQKIILRLICSVLDAFHFMKPANDASGNSDAMSEDADSSLTFSLTTVS
SEKQQYLQKVVFPQVQKLLGSDPEKVNVNINLVALKILKLLPVNYFESQLSSIIHRICNF
LKNRLESIRDEARSALAASVKELGIGYLQFVVKILRAILKRGFELHVLGYTLHYLLSKNV
TADMYGRLDYCLEDLLAVVDSDLLGDVAEQKEVEKLASKMKETKKRMSFETLKLIAQSIT
FRTDLLKKIISPVSLHLQKQLTPKLKTRLEMMLHNIALGIECNPSTETSNLFIFVYCLIE
DTITGSRSERKENTQSSPDQDSTVGFLGLGDSGAQNSYILTKFALDLLRNRLKSIKLDKE
DEQLVKMLDPFVDLLQKCMSSKHETVLSATFRCFALLVKLPLPSLKDSANVVKNVLMDIV
QRTGNSNGHLVTSCFKLLADLLRGFRISLSDNQLQMLVHTPMFVDLQTNPSPVALSLLKT
IVRLKLVSHEIYDMVVKIAELMVTTLTESIQQQCIQIMLQFFLNYPLSEKRLQQHIDFFL
ANLSYEHPSGREAVLEMLHDILTRFPQRIIDDQGQTFFLHLVVALANEQHQNVSSMILRA
IQKLLGRIGDQGKSSIFEYSLSWYTGEKKSLWSASAQVIGLLVGDHTLQTGKHLKSILPV
VKKIVESSVIASGAIQLGLSDEAILPLWKEAYHSVAMMERLLLRFPELYFEQNMEDIWII
VCKLLIHPHSMLRSISSSLVASYFATAEKRKREQKLDAPSWLLVQPSRLFIIAVSLLKQL
RTELSDTTANNLIVQNLAYSVCNLHMLIRQSTSTHQFWSSISSDLGAFLEGFELLGSTKV
KNMFLLCTSTSSDVSGSNLGINEEPTSLLVSSILKKMGRIAMQMQDTQIKIVFNCFSMIS
SALGADESLTYADHLLAPLYKVSEGFAGKVVSDEVKQLAQGVQNKLRDLIGSEKFVEVYK
SVRMGLKQKRDGRKQAQKIVAAVDPERHAKRKQRIASKHREHKRRKIMAMKIGRWMR
NT seq
8094 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccccgtcttacgcggcggtgaagtgcctcaacacgtcctcgtccagccgcaag
cgcttctcgttcaagagcttctcgcagcgggtggaggagatcgacatcgatgtgtaccgc
agcctccacacgctgaaggcggagccatccagtggatcgtccttcttcctcgacgcaatt
gtggagtggagggagctcaatactgcagaggatttcatctcattttatgaggagatgata
ccattggtacagacactgcctcaaattgtcttacaccgtgaaaagctcttttccgcactt
gtacaaagggttaacatgagtgcaagattgtccctggagccgatactcatgttgattgca
gctctctccagggatattctagaagattttttgccctttttaggaagacatgctagtgcc
cttttatctctccttaatgatggaggtgatcgtgaccccgaaatcctggagcaggtcttc
acatcctggtcgtatataatgatgtacttgcaaaagtatctagtgaaagatactgtccaa
attcttaggatcacagcagcgttgagatatttcccaaaggactatgttagagaatttatg
gcagaatctgtatcatttttgctgaggaatgcacctaataatcagctaacgcaaggtcta
ctgaaagttctatttgacgctgctaaacaaccatcacctacacggatagacggggtggtc
tctttgctgtggcatgtcatgaaaggaactttcacaaagctacactccaaagctgggcag
gtcttgaagttcttgttgagcaagtcagttgtttccactctccgtgataaataccctgat
gggtcttctactattcatgaggtcatgacagggctgattcaaagattatgcgatgaagtg
gatccaaaagaattaccattgatgtatacttgtttatttgaagaaatcaactgctgtctt
aaggatggctgtttggagcatttgaagtgcttgattgatttccttgcatttgctttacag
aagaagcaaagcaatgtattcgataaggtgaagatgattaaacttgttgaggtgctggtt
aatagatatgtgttgccttgtagcaacataacagaagcttcttcatctgaggttcttgga
agtattcttgactttctgctttctgttctggatgttccaaccatatctggcaacttgtcc
atcgtatcacctttctatgctccagtgttcaaattaacaaatccaagtgtgattgtcttt
ataaagaaacttttggcgaccggtcctcaagttacacagcattttgaaagtcagatattg
agtgcaatggataatttcattgcaagttcacccgaggatgttatctttatccttctaaat
ttctttaaaggatcaaagaagcaaatatgtcttcgtagcactgatggaaatcatctggat
tcagtggagaaaacttacaagttctttgaatcaaaattttctttctggatagagttatta
gatgatacagtcagcactggtaatcgatctagtaataatcaggtcagtgaaaaggaagct
gctatactgtggggatctatttgctgctatcctaacatgaaaggtgtacatcaagatggt
ttgtcactgctgaggaagttaatcttcaactttgatcggttgcttgaagtgggagaagag
aacatgaatggtcttccaatgactacctggagaagtctacttggtgcagcattgtcatcg
taccacgaactattgctggtcaacaccagcagaaattcagaatttagttttttcatatcg
attgccaagagtcacagtacatgcccacaagtactgtctgctgtagctgaatatttggat
tccctgcaaggactaccatccctggaagtgaccaaagaatttgatccacaaaatctcttg
gatctgttctccatctttgctgtcaatttgagcagtccaagcaagaatgttcgaatttta
accttgaggattctatcatattttgtgaagatggataaacgtcttatcacagatgaggag
cgaccacacaagaggcagagaacagaagtttctggagaggaagctgttgctaaatacgct
aatgttgtggatactcttttgattattgagtcgacaccaatttcagtatctactagccgt
aaaattgctatcttcatttctcggatacaaatgagtttatcttcgaagatggttcatgat
gattacatacctcctctcttacatggtattattggcatattgtacaatagatttagtgat
ctgtggccaccaacactggattgccttgctgtcctcattagacaacacaaggagcttgtt
tggggtcagtttgttcagtttattgcaattcaccaatcaaaaggactgactgtgaaaaat
caggagaagctggaagctgcaacccaaccacagtctatttttgactgcttcaacttgtat
cttgctatggactttgattgcacaccagctgagaccatggctaccttattgcttcaatcg
cttcaaaggattcctgatgttgctgaatcccgatctcgacatcttataccgctatttctc
agtttcatgggttatgatgatggcagcgtctttagtgctgattcatatatgcctgaaaaa
tgtaaaggcaaacaatggaaagtgattctaaaagaatggttaaacttattgaggttaatg
cacaatgcaagatcgttatatcagagcaaatttctgcaggaagtgctaactaaaagggtt
cttgatgaaagtgatcctgacatacaagcaaaagcattggattgccttttgaactggaag
gatgaattcttgaccccatacagtcaaaaccttaaaaatctgattgatgtaaagactctt
cgtgaagagctgaccacatgggcagtttcacatgactcctcgtcaattctgaaagaccat
agaagtcgtgtggttcctctggttatccgtgtgttggcaccgaaagtaaggaagctgaag
ctacttggttctcgaaagcacacaggtgtcagccatcgaaaggcaattcttcgttttctt
ttgcagttagattcaaatgaacttgagctctttttctcattacttctgaggtccttgatc
cctggcggcctccagcttaaaatgtttggttctcagtctgacaatctacttggaaatttc
actgacattgttggaacttcaacagaaatttgtgtagagaactttacatggaaaaaggca
aatggtttcattcatctggttgaagaaatttttggtacttttgatatggcacatataagc
ccatttcttaatgttttattaatcattgtcgctcgcttgctggagagttgcatgcggaat
cttagaagtgggagtgatgggaaatatccttgcaaccaatcaaatgaccatgataatgat
tgctccataaattctgaagtgggcaattctgtaaacttggatgaaagccgtaaagaaatg
catctaggagaccatatggaggaacctcactctttcatgcagacaagtgtatccatcaag
cagttgaaggatttgaggtcttcatgtattagaattgtctcttcagcccttagtcacttt
gaaagccatgagtttggagaaaacttctggaacatttttttctcttctgtgaaacctctg
gtagactgctttacacaagaggcttccagtagtgagaaaccaagttcattatttgcttgt
tttatggctatgagtgggagcccaaaattagcaccactgctggggtcaaataatcttgta
ccagctattttttctattttaactgtgaagacagcatcaggatccatcaccacctatgca
cttgagttcattgagaatctgttgaggttggatgttgatttgcagcagcaagatgaccat
tcagtgaagaacgttcttcttccacatatggatgttcttatccatagtctccatgatttt
gttaatcatcgcaaagagcttaacaggagatctggtacatggcttgggcaacgcgaactt
aggctgttcaaattattgctaaattacatcacagatccctcagctgctgataatttcata
gaccttattcttccatttttcagtaagaaagatttgaactccgatgattgtttggaagca
ctatgtgttgtgaggggaataattcaaaatctgagatgcaaggtatctgtaaaagttcta
aatgcactgaacccattacttgcgattgttggattggaactgcggctatgtatctgtgat
atttatgctgagttgtcattgcatgatccttcaatgttgtttctggctgggttcatacga
gatctgaatgcagtttcagcttcagaacttggtgaactagattatgacacaagacttaac
acctatgacaaggttaggccacagttgtttcttggcttgacagaagagcatgtgggcgcc
atattgtctcattgtgtgtatgatatgtcatctgaagagttgattttgcggcaaagtgca
tcgagggctctgcagtcattcctggatttttctgcctcagttatgaatgatgatctgtcc
aaattctctattgatgataagtctagagagaataataccagaagcatttgcacgatgggc
tgtattcagaagatattggaaaaaacttatctgcacaatatgggagtagcaatgactaaa
gatatatcaattcaaaaggaatgggttattttacttagggagatggtctccaattttaat
catttagcatccttaagatcatttaggcctctctgtaaggaggatatggaagatgatttt
ttccacaacataactcatttacaggctggtaaaagatcaaaagcattgtcgcttttcaga
cagggaatcaaggaaaacaacttttcagaggatatcactatgaaagtctttgttccacta
tttttcaatatgttttctgacgtaaaagctgggaagggtgaacaagtcagagatgtatgt
ttggatacactatctgctgttgctgccaaagtgcagtgggaacactatagaacaatattg
aagagatgcttccaagaattaaaccttagacctgataagcagaagatcatattgaggctg
atttgctctgtgttagatgcattccatttcatgaagcctgcaaatgatgcctcaggaaat
tctgatgctatgagtgaagatgctgattcttcccttacattctctttgactacggtctct
tctgagaagcaacagtacctgcaaaaggttgtgtttccgcaggttcaaaagttgttagga
tcagatccagagaaagtcaacgtcaacataaacctggtagcactgaaaatacttaagttg
ttaccggtgaattattttgagtcacaactttcgagcatcattcatcgaatctgtaacttc
ctcaagaatcgtcttgaaagcatacgtgatgaagctaggtctgctttagctgcttctgtg
aaggaacttgggattgggtatttgcagtttgtggtcaagatattaagagctatacttaaa
agaggttttgagttacatgttctgggctacacacttcattatttattgtcaaaaaacgtt
actgctgatatgtatggtaggcttgactactgtttagaagatctgttggcagtggttgac
agtgatttacttggagatgttgcagaacaaaaggaagttgaaaaacttgcctccaaaatg
aaagagacaaagaagagaatgtcatttgagactcttaagttgattgctcaaagtattaca
ttcaggacagatttactgaagaagataatatcgcctgtttctttacatcttcagaagcaa
cttactccaaagttgaaaaccagacttgagatgatgctacacaatatagccttagggatt
gagtgcaacccatctactgaaacatcaaacttgtttatctttgtgtattgtcttattgag
gatactattacaggaagtagatctgaacgcaaagagaatacacaatctagtcctgatcaa
gacagtactgtaggattcctgggactaggtgatagtggtgcacagaattcttatatactt
accaagtttgcacttgacttacttcgtaatcgtctgaagagcatcaagctagacaaggaa
gatgaacaactcgtgaagatgttggatccttttgttgaccttttgcaaaagtgtatgagt
tccaaacatgaaactgttctctcagccacttttagatgttttgccttgttggtgaaactt
cctttgccatctctcaaggacagtgcaaatgttgtaaaaaatgtacttatggacattgta
cagagaactggaaactccaatggtcatttggtcacatcttgttttaagctacttgctgat
ctacttagaggattcaggatttcactttcagataatcagcttcagatgcttgttcatacc
cctatgtttgtggatcttcagacaaatccttcccctgttgccttatcacttctcaaaaca
atagtcaggctaaaattggtttcccacgaaatttatgatatggttgttaagatagcagag
ttgatggtaacaacactaactgaatctatacagcagcaatgcattcaaattatgctacaa
ttttttctgaactatccactttctgagaagcgcttacagcaacatattgacttttttctg
gcaaacttaagctatgaacatccttcaggaagagaagcagtgcttgaaatgctccatgac
attcttaccagatttccccagagaattattgatgatcagggtcaaactttttttcttcat
cttgtagttgctctagcgaatgaacagcatcagaatgtgtcttcaatgatcctcagagct
atccaaaagctgttaggacgcattggtgatcagggaaagagttccattttcgagtattcc
ctttcgtggtacactggtgaaaagaaaagtctgtggagtgcttcagcccaggttattggt
ttacttgttggcgatcacacattacaaacgggcaagcaccttaaaagtattctacctgtt
gttaagaaaatagtggaatcatctgtcattgcttctggagctatacaattaggtttatct
gatgaagctatcctgccattgtggaaagaggcttaccactctgttgccatgatggagagg
ttacttcttcgctttccggagttgtattttgagcagaacatggaggacatatggataata
gtatgcaagttgttgatccatcctcattcgatgttgcgtagtatttcaagctctctggta
gcatcatattttgctacagcagagaagaggaaacgtgaacagaaattggatgccccatca
tggttgcttgttcaaccaagcaggctattcataatagctgtttccttgttgaaacaattg
aggactgaactgagtgatactacggcaaataatctgattgtacagaatcttgcatactca
gtctgcaacttgcatatgctgattaggcaatcaacctcaacacatcagttttggtctagc
attagttctgaccttggtgctttccttgagggttttgaattgcttggttcaacaaaagtg
aaaaatatgtttctcctttgtacttcgacatctagtgatgtatctggatctaaccttggc
attaacgaagagcctacatctttgttagtttcgtcgatcctaaagaagatgggaagaatt
gcaatgcagatgcaggatacacagataaagatcgtgttcaattgcttcagtatgatttca
tcagctcttggtgctgatgaatcactaacctatgctgatcacctcttggccccattgtat
aaagtttctgaaggatttgctgggaaagttgttagtgatgaagtgaagcaactggcccag
ggggtccagaacaagttacgtgacctgattggctctgagaaatttgttgaagtctacaag
agcgttcggatgggcctgaaacagaagcgggacggtagaaagcaggcacagaagattgtt
gcagccgtggacccagaacggcatgccaagcgaaagcagcgtatcgcatccaagcaccgg
gaacacaagaggcggaagataatggctatgaagattggcaggtggatgaggtag
DBGET
integrated database retrieval system
