Sorghum bicolor (sorghum): 8078478
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Entry
8078478 CDS
T01086
Name
(RefSeq) probable polygalacturonase At1g80170 isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00040
Pentose and glucuronate interconversions
sbi01100
Metabolic pathways
Module
sbi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8078478
Enzymes [BR:
sbi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
8078478
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Motif
Pfam:
Glyco_hydro_28
Beta_helix
DUF1565
NosD
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
8078478
NCBI-ProteinID:
XP_002457261
UniProt:
C5XNE5
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Position
3:complement(4572289..4575745)
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AA seq
431 aa
AA seq
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MRVLEYFYKGKCWSIYHIGSMTLLPIQQRFHMILALKRTAVRHAFIMLLVLVWAIRSAQC
HQQKYNVVRFHAAADGKTDDSQAFLATWQAACSDQARPIMVIPGRRTFLLSEVTFQGPCK
SPITIQLDGNIVAPNHIWTTEQTNLLTIHGVDNLTLDGKGEIDGRGAIWWDCYNNKRCHT
RPILLAFSLCNDLWVRNIRLKNSADKHMTLFQCNQALIDGVSITAPADSPNTDGITVASS
NSTTISNCSIQSGDDCVSILSHTKNITVTHSTCGPGHGISVGSLGKSERAKVEQIVITNC
SFVGTMNGVRIKSWQGGKGYAKGFLFASLNMTEVQYPIVIDQFYCPQGNCPTKPGGVAIS
DAKFIDIQGTSSEQEAIKLLCSQSVHCHGIYLSNVNLSWVNHTTPTNATILNAHGTTEGM
VIPTIQFSESL
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgagggtgttggagtatttttataagggaaagtgttggagtatctatcacattgggtcc
atgacactgttgccaatccaacaacgatttcacatgatcctcgccttgaaaaggactgca
gtaaggcatgccttcatcatgttgcttgtacttgtatgggccattcgttcggcacagtgc
caccaacagaaatacaacgtcgtcaggttccatgcggctgcggatggcaagacagatgat
tcacaggctttcttggcgacatggcaagcggcgtgcagcgatcaggccaggccaatcatg
gtcatcccaggaagaaggacgttcttgttgagtgaggtcacatttcagggcccgtgcaag
tcaccaatcaccatacagctggacggcaatattgtagcaccaaaccacatttggactact
gaacaaaccaacctcctgaccatccatggcgtcgacaacttgaccttggatgggaagggc
gagatcgatggccggggtgccatctggtgggattgctataacaacaagagatgccacacc
cggcctattttgctggccttctccttgtgcaatgatctatgggtcagaaatatacggctg
aagaatagtgcagacaagcacatgaccttgttccagtgcaaccaggcgctcattgacggt
gtctccatcactgcgccagctgatagccctaatacagacggcattactgtggcatcatcg
aacagcaccaccatctccaactgttctatccaaagcggtgatgactgtgtatcaatccta
tcacacacaaaaaatattaccgttactcacagcacatgcgggcctggtcatggtatcagt
gtgggaagcctcggaaaatcagagagagcgaaggtggaacaaattgtaataactaattgc
agctttgttggaactatgaatggtgtaaggataaaatcctggcagggagggaagggatat
gcaaaaggattcctttttgcgagcctcaacatgacagaagttcagtatcctattgtcatc
gaccagttctactgcccgcaaggaaattgtcctacaaagcctggaggcgtggcaataagt
gatgcaaaatttattgacatccaagggacatcatccgagcaagaagccatcaaattatta
tgcagccaaagtgttcattgtcatggcatctatctcagtaacgttaacctttcttgggtg
aaccatactaccccaacaaatgctactattctgaatgcacatggaacaactgagggcatg
gtgataccaacaatacagttttcagagagtttgtag
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