Sorghum bicolor (sorghum): 8078479
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Entry
8078479 CDS
T01086
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14 isoform X4
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8078479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbi03041
]
8078479
03009 Ribosome biogenesis [BR:
sbi03009
]
8078479
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
8078479
Spliceosome [BR:
sbi03041
]
Complex A
U1 snRNP components
U1 related factors
8078479
Complex B
8078479
Ribosome biogenesis [BR:
sbi03009
]
Eukaryotic type
Pre-60S particles
Helicases
8078479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
8078479
NCBI-ProteinID:
XP_002455105
UniProt:
A0A921RB51
C5XNF0
LinkDB
All DBs
Position
3:4601682..4608292
Genome browser
AA seq
673 aa
AA seq
DB search
MESSASAPASKGPRYAPPDPTLPKPWRGLIDGNTGYLYFWNPETKVTQYERPVAAVPSSP
SQPPGYSRHDEKPRSSAPSEQRSEAAVSRQQYVPPSDNRARNDHSEPRSASGVNLSQSAP
STNQVSQAANGSQMSTEAYRAKHEITIVGNEAPAPFMTFQSTGFPSEILREVLQAGFSAP
TPIQAQSWPIAIKGRDIVAVAKTGSGKTLGYLLPGFILLKRLQHNSREGPTVLVLSPTRE
LATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLRELERGADVVVATPGRLNDILEMNKVS
LRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPPRRQTLMYTATWPKEVRRIASDLLNNPV
QVNIGNTDQLVANKSITQHVEVIPHMEKSRRLDQILRSQDPGSKIIIFCSTKRMCDQLAR
NLSRQYGASAIHGDKSQSERDSVLNDFRSGRCPVLVATDVAARGLDIKDIRVVVNYDFPT
GVEDYVHRIGRTGRAGATGSAYTFFGDQDSKYASDLVKILEGANQSVPQQLKEMALRGGY
GGRSRRWASSDDSYGGQGYGAKRSTDSFNNSSFGNQAGGGSSFHSSFHNSSSGNQFGDTT
SFHGSYDNSSRNNQTGDNASFPPSSSNNQSGDGLSFHERFYGSRGRDQSKTSNDGFRARS
RSPPGKPVGVSNW
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgtcggcgtccgcgccggcgtccaagggcccgcgctacgcgccgccggatccg
acgctcccgaaaccgtggagggggctcatcgacggcaacacggggtacctctacttctgg
aacccggagaccaaggttacgcagtacgagcgccccgtcgcggccgtgccttcctccccg
tcgcagccgcctggctactccaggcacgatgagaagccgagaagcagcgcaccttccgag
cagcgctcggaagctgcggtgagccgccagcagtatgtgcctccctccgataacagggca
aggaatgatcactcggagccacgctctgcatctggagtgaacctttcacaaagtgctcca
tccactaatcaggtttctcaggctgccaatggaagccaaatgtcgacagaagcatatcgt
gctaagcatgagattaccattgttggcaatgaggcacctgcgccattcatgacatttcag
tccacaggcttcccatcagagattctaagggaggttctgcaagcaggtttctcagcacca
actcctatccaagctcagtcatggccaattgctataaagggtcgtgatatagtagctgtg
gcgaagacaggttcaggaaaaacattgggctatctcctcccagggtttattcttctgaag
cgcctgcagcataattcaagggaaggtccaacagtattagttctgtctccaaccagggaa
ttggcaacacaaattcaagacgaagcaatcaagttcggaagatcttcaagaatatcttct
acttgcttatatggaggtgctccaaaaggccctcagctaagagagttggagcgtggtgcc
gacgttgttgtcgcaactcctgggagattgaatgacattttggaaatgaataaagtgagc
ctgcgccaagtgtcttatcttgtccttgatgaagctgaccgtatgcttgatatgggattt
gagccacaaataagaaaaattgtgaaacaaataccacctagacggcaaactcttatgtac
actgccacatggccaaaagaggttagaagaatagcgtcggatttactgaataacccagtt
caagttaacattggaaacactgatcagctggttgcaaataagtcaattactcagcatgtg
gaagtcatcccacatatggagaaatcaagacgacttgatcaaatcttgcggtcacaagat
cctggatcaaaaatcataatattttgctccactaagaggatgtgtgatcagttggctaga
aacctatcacggcagtatggtgcttctgctattcatggtgataaatcacagtctgagagg
gattctgtgttgaatgactttcgaagcggcaggtgtccagtacttgtagccactgatgtg
gccgctcgaggcttggacataaaggacatcagggtcgtggttaattatgatttcccaact
ggtgtggaggactacgtccatagaattgggaggactggtagggctggtgcgacaggttct
gcctacacattcttcggtgaccaggattcgaagtacgcttcagatcttgtcaagattttg
gagggtgcaaaccaatctgtgccacaacaattaaaagaaatggctcttcgtggaggatat
ggtggaagatcacgtcggtgggcatcttctgatgactcttatggtggtcaaggatatggt
gctaaaagatcaactgatagcttcaataacagcagcttcggcaaccaggctgggggtggt
tcaagctttcactcgagcttccataacagctccagtggcaatcagtttggtgatactacg
agctttcatggcagctatgataacagcagccgcaacaatcagacaggtgacaatgcgagc
tttccacccagctccagcaacaatcagtctggggatggtctcagttttcatgaaaggttc
tatggatcacgtggaagggaccagagcaaaacaagcaatgatggattccgtgcaaggagc
agaagtcctcctggcaagcccgtgggagtttccaactggtga
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