Entry |
|
Name |
(RefSeq) histone deacetylase 19
|
KO |
|
Organism |
sbi Sorghum bicolor (sorghum)
|
Pathway |
sbi03082 | ATP-dependent chromatin remodeling |
|
Brite |
KEGG Orthology (KO) [BR:sbi00001]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
8078655
03083 Polycomb repressive complex
8078655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:sbi03036]
8078655
Enzymes [BR:sbi01000]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
8078655
Chromosome and associated proteins [BR:sbi03036]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
8078655
HDAC complexes
Sin3A-HDAC complex
8078655
BRAF-HDAC complex
8078655
REST complex
8078655
SHIP complex
8078655
MiDAC complex
8078655
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
8078655
Heterochromatin formation proteins
Other heterochromatin formation proteins
8078655
Chromatin remodeling factors
NuRD complex
8078655
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
3:complement(52802297..52806221)
|
AA seq |
467 aa
MDTSGNSLPSPSCPDGKKREVCYYYDAGIASVDYGEDHSMVPRRVDMAHALVRSYGLLHD
MRRLRTRPATVTEITGDFHEPDYVRLLQNLTPESFYAGGATMSAAKAHNIGVLKEGETFY
DNPPIAGLWDYCQRYAGGSLAAARALGEGKADIAINWSGGMHHACKAAASGFCFVNDIVL
AIKDLLHHFRRVLYVDIDVHHGDGVETAFLDSNRVMTVSFHQRTKNFFPEERGHVNHVGE
GAGLYRALNVPFMEGVGDEGYCEMFKAIMKRVVDVFQPEAIVMQCGSDSLSGDRLGQLNL
SIAGHAQCVSYMRSFNLPLLLLGGGGYTVNHVAACWCYETAVAIGKEIDDNIPVHCYDTY
YSGQGYKLHYPVDKQLKNENKRSYLERTMTAVLENLSHLEAAPSVQFQDPPGPGGSGSTN
TEPLFYEQAPREDDDPMERLHRLCGERDERCFFRELGKKRQLANFFA |
NT seq |
1404 nt +upstreamnt +downstreamnt
atggacacgagcggcaactcgctgccgtccccgtcgtgccccgacggcaagaagcgggag
gtgtgctactactacgacgccggcatcgccagcgtcgactacggcgaggaccacagcatg
gtgccccgccgagtcgacatggcgcacgcgctcgtccgctcctacggcctgctccacgac
atgaggcgtcttcgcacgaggcccgccaccgtcacggagattaccggagactttcatgag
cccgactacgttcgtttgctgcagaacctcaccccggagagcttctacgccggcggcgcc
accatgagcgcagcgaaggcgcacaatataggcgtgctcaaggaaggcgagactttctac
gacaaccctcccatcgccggcctctgggactactgccagcgctacgccggcgggtcgctg
gccgcggcgcgcgcgctcggcgaaggcaaagccgacatcgccatcaactggtccggcggc
atgcaccacgcgtgcaaagcggcggccagcggcttctgcttcgtcaacgacatcgtgctc
gccatcaaggacctcctccaccacttcaggcgcgtgctgtacgtcgacatcgacgtccac
cacggcgacggcgtcgagacggccttcctcgactccaaccgtgtgatgacagtgtcgttc
caccagcgcaccaagaatttcttcccggaggaaaggggacacgtcaaccacgtcggcgaa
ggggccggtctgtaccgtgctttgaacgtgccgttcatggagggcgtcggcgacgagggg
tactgcgagatgttcaaggccatcatgaaaagggtcgtcgacgtgttccagccggaggcc
atcgtgatgcagtgcggcagcgactcgctctccggcgacaggctcggccagcttaacctg
tccatcgccggccacgcccagtgcgtcagctacatgcggagcttcaacttgccgctgctc
cttctcggcggcggcggatacaccgtcaaccacgtcgccgcctgctggtgctacgagacg
gcggtggccatcggcaaggagatcgacgacaacataccggtgcactgctacgacacctac
tacagtggccaaggctacaagctccattacccggtggacaagcaactcaagaacgaaaac
aagagaagctacctagaacgcacgatgaccgcggtcctagagaacctctcccatctcgag
gcggcgccgagcgtgcagttccaggatccgcccgggcccggcggaagcggaagcaccaat
accgagccgctattctacgaacaggccccgcgagaagacgacgaccccatggagaggctg
catcggctttgtggcgagagggacgagcgctgcttcttcagagagttgggaaagaagcga
cagttggcaaatttttttgcgtga |