Sorghum bicolor (sorghum): 8078659
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Entry
8078659 CDS
T01086
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00040
Pentose and glucuronate interconversions
sbi01100
Metabolic pathways
Module
sbi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8078659
Enzymes [BR:
sbi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
8078659
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
8078659
NCBI-ProteinID:
XP_002456767
UniProt:
C5XER2
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Position
3:69708028..69710073
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AA seq
403 aa
AA seq
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MAMAKPVLSLLVHLHAALLFLPDPAGGAVYNVLRYGARPDGATDAAGPFLRAWADACRSP
RPATVYVPPGRYLVRSATFTGPCHSSAVTFAIAGTVVAPARYGARGSSGRWITFENMDGL
VVSGGGTLDGRGRALWACRRRGGQRDCPNPTSSLTIANSRNVVVAGVRSVDSELFHVVVL
QCHGVTVRGVTVEAPADSPNTDGIHMHMSSHVSVYDARISTGDDCISIGPGNSHLWIERV
ACGPGHGISIGSLGKQQGMEVEAVQNVTVKTTWFTGTMNGLRIKTWGGSKRGFVTGVTFA
DSTMSGVDNPIIIDQNYCPDSSGCPGAGRSSSIRISDVRYVGIRGSSATPVAVNFDCSRS
NPCSGISLQDVALTYQNRPAAAKSYCRNVQGTTLGLVLPPSCL
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggccatggccaagcccgtcctgagcttgctcgtgcacctgcacgccgccctcctgttc
ctgcccgacccggccggcggcgcagtgtacaacgtgctgcgctacggcgcccgccccgac
ggcgcgacggacgcggcgggccctttcctccgcgcgtgggcggacgcctgccgctcgccc
cggccggccaccgtgtacgtgccgcccggcaggtacctggtgcggagcgccacgttcacc
gggccgtgccacagcagcgccgtgacgttcgccatcgccggcacggtcgtcgcccccgcg
cgctacggcgcgcgcggctcgtcggggcggtggatcacgttcgagaacatggacggcctc
gtcgtctccggcggcggcacgctggacggccgcggtagggcgctctgggcctgcagacgg
cgcggcgggcagcgcgactgtccgaaccccacgtcgtctctgacgatcgccaactcgagg
aacgtggtggtagccggcgtgcggtcggtggacagcgagctgttccacgtggtggtgctg
cagtgccacggcgtgacggtgcgcggggtgacggtggaggcgccggcggacagccccaac
accgacgggatccacatgcacatgtccagccatgtgtcggtgtacgacgccaggatcagc
accggcgacgactgcatttccatcggccccgggaactctcacctctggatcgagcgcgtc
gcctgcggccccggccacggcatcagcattgggagcctgggcaagcagcagggcatggag
gtggaggcggtgcagaacgtgacggtgaagacgacgtggttcaccggcaccatgaacggg
ctgcggatcaagacgtggggcggctccaagcgcggcttcgtcacgggcgtcaccttcgcg
gactccaccatgtccggcgtcgacaaccccatcatcatcgaccagaactactgccccgac
agcagcggctgccccggcgccggcaggagctccagcatcaggatcagcgacgtgcggtac
gtgggcatccggggctcgtcggcgacgccggtggccgtcaacttcgactgcagccggagc
aacccctgcagcggcatcagcctgcaggacgtggcgctgacgtaccagaaccggcccgcc
gccgccaagtcctactgccggaacgtgcaggggaccacgctcggcctcgtgctgcccccg
agctgcctctga
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