Sorghum bicolor (sorghum): 8078728
Help
Entry
8078728 CDS
T01086
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03013
Nucleocytoplasmic transport
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8078728
09122 Translation
03013 Nucleocytoplasmic transport
8078728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8078728
03041 Spliceosome [BR:
sbi03041
]
8078728
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
8078728
Spliceosome [BR:
sbi03041
]
Complex C
Other components
EJC/TREX
8078728
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
8078728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
HetE-N
Motif
Other DBs
NCBI-GeneID:
8078728
NCBI-ProteinID:
XP_021312642
LinkDB
All DBs
Position
3:complement(70987629..71007121)
Genome browser
AA seq
1771 aa
AA seq
DB search
MSPPLQAPNYKHITEECLREWKGQSAGASRLPDPVPMARFLYELCWAIVLGDLPPQKSRV
AVESVVFMEEARREEELGSVLADIIAHLGQDITISGEYRSRLVKMTKSFLESSITVPRLL
QERCEEDFLWEVEQSKLKGQDLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQV
GSDLACQNSSSVTISIIKSLIGHFDLDPNRVFDIVLECFELYQDSNIFHQLIPLFPKSHA
AQILGFKFQYYQRLDVNSPVPSGLFRTAALLIKSGFIDLDNVYSHLLPNDDEAFEHFDSF
ISRRIDEANKIGKINLAATGKDLMDDEKQEITIDMYTALEMENDIVGERAPEMEKNQKLG
LLLGFLSVHDWYHAHLLFERLAHLNPVEHIEICDGLFRMIEKTMSSAYHIGCHLYYYLPP
RNDADQTGTSALSLSSFDLPKEFFQMLTACGPYLHRDTQLLQKVCRVLKAYYHSSKESTR
AANVVSPESRMEEALGSCLFPSLQLIPANPAVDIEIWGVLSLLPYEARYRLYGEWEKETE
QNPIVLAARQTAKLDTRRLLKRLAKENLKPLGRMVAKLAHANPMTVLRTIVQQVEAYRDM
ITPVVDAFKYLTQLEYDILQYIVIERLAQGGRAKLKDDGLNLSDWLQCLASFWGHLCKKH
NAVELKNLLQYLVNQLKKGVGIELVVLEELIQQMANVQYTENMTEEQVDAMAGSETLRQQ
ASLFGATRNYKVLSKSTNRLRDSLLPKEGPKLAVPMLLLIAQHRSKIIINADATYIKMVS
EQFDRCHGILLQYVEFLSSAVTPTAYAQLIPPLQDLVHKYHIEPEVAFLIYRPVMRLFKS
SNGGDTCWPLDDNEEGESVSSDDLILHLDSSQEPIMWSDLLNTVQSILPAKAWNSLSPDL
YATFWGLTLYDLHFPKDRYDTEIKKLHDNLKQLEDNSDNSSIAISRRKKDKERIQDLLDK
LNSESQKHQQHIASVVQRLAREKDKWLSSSPDAMKINMEFLQRCIFPRCVFSMQDAVYCA
TFVQTLHSLGTPFFNTVNHIDVLVCKTLQPMICCCTEFEAGRLGRFFHDTLKMAYYWKSD
ESVYERECANKPGFAVYFRYPNSQRVSYSQFVRVHWKWSSRITKALNQCMESKEYMEIRN
ALIVLTKISSVFPVIRKSGVNLEKRVAKLKGDEREDLKVLATGVAAALAARKSSWLSEEE
FGMGHIDLKPATARSVLGNQSADPSMPKDQNARAKSIENRHERSEGAMKPDVQQKKSSVA
ANGSDIQISSSSIQGKSSVVVRAVDEPPKPVSDEGVKVSTKPTSESETRATQKRAHNAGK
VMKNDVAKEDAKAGKSTSWNVNQQVSTVDREAMPHGADAAQETNTTISNGNLHPVQRKVS
SSSQRNAVLVTHNGAANPSGESIDLIDSTVRQQKRSALIEEQDRSGKRRKGENEPDLSEH
HVDKEKSLDSRGGDKFRSVDHEKSANEEHNLSRADRMKEKSDDKYDRDPREKLDRAERRR
GEDAIERSTDRLSERRERSIERMQERVTDKASEKGREDRNKDERNKVKYAEPSVDRTHSS
DERFRGQSLPPPPPLPASFVPQSVGANRREEDGDRRGGSSRHVQRSSPRRDEKERKQSEE
NTSSFQDDGKHRREEDIRDRKREDRDILSNKVDDRDREKGTSLKEDSDPSNASKRRKIKR
DQTSLEAGEYAPSAPQPPSHGSGSSQLSDVRERERKGLISQHRTSHADDLPRTHGKDTAS
KSSRRESDQMHEREWEEEKRPRTETKRKHRK
NT seq
5316 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccccctcttcaggcgcccaactacaagcacatcacggaggagtgccttcgcgaa
tggaagggccagtccgccggcgcctcccgcctccctgatccggtgcccatggcgcgcttc
ctctacgagctctgctgggcgatcgtgctgggcgacttgccgccgcagaagagccgggtg
gcggtggagtcggtggtgttcatggaggaggcacggcgggaggaggagctcggctccgtg
ctagctgatatcattgctcacctaggacaggatattacaatctctggtgaatatcgcagc
cgtcttgttaaaatgactaagtcatttctggagtcctcgattactgtgcctaggcttctg
caagagcgatgtgaagaagatttcctttgggaggttgaacagagtaagctgaaaggacag
gatttaaaatccaaggaggttagggtcaacacacggcttctttaccagcaaactaaattc
aacctcttacgggaggaaagtgagggctatgccaagttggtgacactcctttgtcaagtt
ggttcagatctggcttgccagaattcttcttcggttacgatcagcattataaagtcattg
attggccattttgatctggacccaaatcgtgtatttgatattgtgttggaatgctttgaa
ctttatcaagatagtaacatctttcatcagctcatacctctttttccaaagtcccatgct
gctcaaattttggggttcaaattccagtactatcaacgattggatgtgaacagccctgtt
ccatctgggcttttcagaacagcagctttattgatcaaatctggattcattgaccttgat
aatgtctattctcacttgcttccaaatgatgatgaggcgtttgagcattttgattctttc
atttcaagaagaattgatgaggctaataaaattggcaaaatcaaccttgctgctactgga
aaggaccttatggatgacgagaaacaagaaatcactatcgatatgtatacagcattggag
atggaaaatgatatagttggggagcgagcccctgagatggagaagaaccagaaacttggg
cttcttcttggttttctctctgtgcatgactggtatcatgcacatctactctttgagcgt
cttgcgcacctaaatcctgttgagcacattgaaatctgtgatggattatttagaatgatt
gaaaagacaatgtcttcagcctatcatataggttgtcacctgtattattacttgcctcct
agaaatgatgctgaccagacaggcacatctgctctgtctttaagttcatttgatctgcca
aaggagtttttccaaatgctcacggcttgtggaccatatcttcatcgtgacactcaatta
cttcaaaaggtttgcagagtattaaaagcgtactaccactcatcaaaagagtcaacccgt
gcagcaaatgtagtttcaccagaatctcgaatggaggaagcacttggttcgtgcttgttt
ccttcgttgcagcttatccctgctaatcctgctgttgatatagagatatggggggttctt
tcccttcttccatatgaggcccgctatcgtctgtatggtgaatgggagaaggagaccgaa
caaaacccaattgtccttgctgcaaggcaaactgcgaagctggacaccagaaggctccta
aaacgattggctaaggaaaacctgaagccacttggccgcatggtggctaaacttgcccat
gcgaatcccatgactgtgcttcggacaattgtccaacaggttgaagcatacagggatatg
attacaccagttgtggatgcatttaagtacttgactcagctggagtatgacatcttgcaa
tatattgtcattgaacgcttggcacaaggtggtcgtgcgaaacttaaagatgatggactt
aatctctcagattggcttcaatgtcttgcatccttttgggggcacctgtgcaagaagcat
aatgctgtggaactgaaaaaccttttgcagtatcttgttaatcaactgaagaagggtgtg
ggcattgaacttgttgtcctggaggagctcattcagcaaatggcgaatgtgcagtacacc
gagaacatgacagaggaacaggttgatgctatggcaggaagtgagactttgcggcaacaa
gcttcactgttcggagcaacaagaaactataaggtgttgagtaagtccacaaataggcta
agggattcgcttcttccaaaagaagggcccaaacttgctgttcctatgttactgcttatt
gctcagcatcggtccaagatcataataaatgcagatgccacatatatcaaaatggtcagt
gagcagtttgatagatgccatggaatacttcttcagtatgttgagtttctttcaagcgcc
gtaactccaaccgcctatgctcaactaataccccctttgcaagatctggtccataaatac
cacattgagccagaggttgctttccttatataccgcccagtgatgcggctttttaagagt
agtaatggaggtgacacttgttggcctcttgatgacaacgaggaaggagaatctgtatca
tctgatgatcttatcttacatcttgactcatctcaggaaccaatcatgtggtcagatctt
cttaacacagtccagtcaattttgccagcaaaagcttggaacagtctttcaccagattta
tatgctactttctggggcttaacactctatgatcttcacttcccaaaagaccgttacgat
acagaaatcaagaagctgcatgataatctcaaacaattggaggacaactcagataactct
agcattgcaatttcaagacgtaagaaggacaaggagagaatccaagatttactcgacaaa
ctgaacagtgaatctcagaagcaccagcagcacattgcatctgtggtccaaaggttagcc
cgtgaaaaggataagtggttgagctccagtccggatgcaatgaaaatcaacatggagttc
ctacagcgctgcatattcccacgatgtgtttttagtatgcaagatgcagtatattgtgct
acatttgtccaaacactacactcccttgggactcctttctttaacacagtcaatcatatc
gatgttctcgtctgtaaaaccctacagccaatgatatgctgttgcacggaatttgaagct
ggcaggcttggaaggttttttcatgatacgttgaagatggcctactattggaagagtgat
gagtctgtttatgagcgtgaatgtgcaaacaaaccaggttttgcagtgtacttcagatac
ccaaacagccagcgtgtatcctatagtcagtttgttcgggttcattggaagtggagttca
agaatcaccaaagcgcttaaccaatgcatggaatcaaaagaatacatggaaatccgaaat
gcccttattgtgctcacaaagatttctagtgtctttccggtgattcgtaaaagtggtgtc
aatcttgagaaacgggtggctaaactaaaaggggatgagagagaagatcttaaagttcta
gccactggtgtagctgctgctttagctgctcgcaagagttcttggctatctgaagaagag
ttcggcatgggacacattgatctgaagccagcaacagcaagatctgtgcttggaaaccag
tcagcagatccgtcgatgccaaaagatcaaaatgcccgtgcaaagtctatagagaatagg
catgaaaggtcagagggtgctatgaagcctgacgttcagcaaaagaagagctctgtggct
gcaaatggatctgatattcaaatatcatcttcctccatacaagggaaatcttcagtggtt
gtacgtgcagtcgatgaacctccaaaacctgtgtctgatgagggggttaaagtttccaca
aaacctacttcagaatctgagacaagagcaacacaaaagcgtgcacacaatgctgggaag
gtaatgaagaatgatgttgcaaaggaagatgcaaaagctgggaaatctactagctggaat
gtaaatcaacaagtatcaactgttgatagagaagcaatgcctcatggagctgatgctgcc
caagaaaccaataccactattagcaatggtaacttgcatccagtgcagcggaaggtttcg
tcatcttctcaaagaaatgcagtgttggttacacataatggagcagctaatccctctggt
gagtctattgatctgattgactctactgtgagacagcaaaaaagatctgctctgattgag
gagcaagatagatcaggtaaacggaggaaaggagaaaatgaacccgatttgagtgaacac
catgtagacaaggaaaagagtttggactcacgtggcggagataagtttcgttcagtggat
catgagaagagtgctaatgaggaacataacttaagtagggcagacagaatgaaagagaaa
tctgatgataaatatgacagagatcctagggaaaaattagatcgagctgaaaggcgtcgt
ggggaagatgccattgaaagatcaacagatagattatcggagaggagagaacgctctatt
gaaaggatgcaagagagggttacagataaagcctctgaaaaaggtagagaggatagaaat
aaggatgagaggaataaagttaaatatgctgaaccttcggtggaccggacacattcttct
gatgaacgattccgagggcaaagtttgccaccgcccccacctcttcccgcaagttttgta
ccccaatcagttggtgccaaccgacgtgaagaagatggtgaccgaaggggtgggagctcc
aggcatgttcaaaggtcatctcccaggcgcgatgagaaagaaaggaagcagtcagaggag
aatacttcttcatttcaggatgatgggaagcacagaagagaggaagatattcgtgataga
aagcgtgaggatcgggatatattatcaaacaaggtagatgacagggatagggaaaagggg
acttctttgaaagaagacagtgaccctagtaatgcttctaaacggagaaagatcaagcga
gaccagacttctttagaagccggggaatatgcaccttctgctccacagcctccctcccat
ggatccggcagctcacaattgtctgacgtacgagaaagagaaaggaaagggttaatttca
caacatcgtacctcacacgctgatgaccttcctaggacgcatggcaaggacacagcaagc
aagtcaagtcgtcgagagtctgaccaaatgcacgagagggaatgggaagaggaaaagcga
ccaagaactgaaacaaaaaggaagcatcggaaatag
DBGET
integrated database retrieval system
