Sorghum bicolor (sorghum): 8078772
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Entry
8078772 CDS
T01086
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8078772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8078772
03041 Spliceosome [BR:
sbi03041
]
8078772
03009 Ribosome biogenesis [BR:
sbi03009
]
8078772
03016 Transfer RNA biogenesis [BR:
sbi03016
]
8078772
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8078772
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
8078772
Spliceosome [BR:
sbi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
8078772
Complex C
U4/U6.U5 tri-SnRNP related factors
8078772
Ribosome biogenesis [BR:
sbi03009
]
Eukaryotic type
Pre-60S particles
Helicases
8078772
Transfer RNA biogenesis [BR:
sbi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
8078772
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
8078772
NCBI-ProteinID:
XP_002457231
UniProt:
C5XMP5
LinkDB
All DBs
Position
3:complement(3939517..3947083)
Genome browser
AA seq
1004 aa
AA seq
DB search
MGEEAESTCKRKAPDSSAEEQPSSAPAQSQSQADPAAKRRNLSRSCVHEVAVPKGYESAK
DEAVHGTLANPDFNGEMAKQYPFNLDPFQSTSIACLERNESVLVSAHTSAGKTVVAEYAI
AMAFRDKQRVIYTSPLKALSNQKYRELSQEFTDVGLMTGDVTLHPNATCLVMTTEILRAM
LYRGSEVIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEW
ICSLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFSKLQDSFAKQNN
QLDGRKGGGPKASGRIAKGGSASGNSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMSM
SKLDFNTEDEKECIEQVFRNAIGCLVEEDRSLPAIELMLPLLKRGIAVHHSGLLPIIKEL
VELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIGSGEYIQMSGRAGR
RGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYTILNLMSRVEGQFTAEHV
IRHSFHQFQYEKALPEIIQKITRLEDEATFLDSSGETDLAEYHKLGLDISELEKKIMSEM
IRPERALLYLVPGRLVRVRDGSTDWGWGVVVNVVKKPPVSGTLPPALSASRSNNYIVDTL
LHCSSNSSENGSRSKPCPPRPGEKGEMHVVPVPLPLVSGLSSVRINIPPDLRPPEARQNI
LFAVQELGKRYPQGLPKLHPINDMGIQEPELVDLVHKLEDLEQKQCSHRLHKSGQSDQEL
SWYQRKADLNSEIQQLKSKMRDSQLQKFRDELKNRSRVLKMLGHIDADGVLQLKGRAACL
IDTGDELLITELMFNGTFNDLDHHQVASLASCFVPCDKSSEQIRLRNELSRPMTQLQEAA
RKIAEVQKECKLEVNVEEYVESTCRPYLMDVIYCWSRGATFAEVMEMTDIFEGSVIRLAR
RLDEFLNQLRAAAEAVGEVNLEKKFEKASESLRRGIMFSNSLYL
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgggggaagaggcggagagcacctgcaagcgcaaggcgccggactcgagcgcggaggag
cagccgagttccgcgcctgcgcagtcgcagtcgcaggcggacccggcggccaagcgccgg
aacctctcccgctcgtgcgtccacgaggtcgccgtcccgaaagggtacgagtcggccaag
gacgaggcggtgcacgggacgctcgccaacccggacttcaatggggagatggccaagcag
tacccgttcaatctcgaccccttccagagcacctccatcgcgtgcctggagcggaacgag
tccgtgcttgtctctgcgcacacttctgcggggaagaccgttgttgctgaatacgccatt
gcaatggcgttcagggacaagcagagggtcatctacacctccccgctcaaggccctgagc
aaccagaagtacagggagctcagccaggagttcacagatgttgggctgatgactggtgac
gtcacgctccatcctaatgccacgtgcctggtcatgacgacagaaatcctcagggcgatg
ctctacaggggttctgaggtgattaaggaggttgcctgggttatatttgatgagatacat
tacatgaaggatcgtgagagaggagtcgtgtgggaggagagcatcattttcttgccccct
gccatcaagatggtcttcctttccgctactatgtcgaatgcgactgagtttgctgagtgg
atatgcagcctgcacaagcagccttgtcatgttgtgtatacggacttcagaccgacacca
ttgcagcactatgtgtttccaataggcggttctggtctgtaccttgtagtagatgaaaat
ggccagtttagagaagataacttttcaaagctacaagactcgtttgcgaagcaaaataat
caactggatggaaggaaaggtggtggacctaaagcgagtggccgaattgcgaaaggtgga
agtgcctctgggaattctgacatatacagaattgtcaagatgattatggagcgcaagttt
caaccagtcataattttcagctttagtagaagagaatgtgagcaccatgccatgtctatg
tcaaaacttgatttcaacactgaggacgaaaaggaatgcattgagcaggttttccgtaat
gctattggttgtttagttgaggaagatagaagtttacctgctatagagttgatgttgccg
cttcttaaacgaggtattgcagtacatcattctggacttcttccaataattaaggagctt
gttgagttgctctttcaagaaggtcttgtcaaagctctctttgctactgagacatttgcc
atgggtcttaatatgcctgcaaaaaccgttgttttcacctctgtaaaaaaatgggatggt
gataccaaccgctatattggatctggagaatacatacagatgagtggaagagctggccgg
cgtggcaaggatgaacgtggtatttgtgttataatgatagatgagaagatggaaatgagt
gttatcaaggacatggtgttaggcaaaccagcacctcttgtcagtacttttcgactgagc
tattacactattttgaacttaatgagccgtgtagagggccaatttaccgctgagcatgtg
attaggcattcattccatcagtttcagtatgagaaggcattgccagaaataattcaaaag
attacacggttggaggatgaagctacctttctcgattcttctggagagactgatcttgct
gaatatcacaaattggggcttgatatatctgaactagagaagaaaatcatgtctgagatg
attagaccagagagggctttgttgtatttggttcctgggaggctggttagagtgagggat
ggttcaacagactggggatggggtgtggttgtaaatgtagtgaagaaacctccagtatct
gggactctcccccctgcattaagtgcatcacgcagcaataactatatagttgacaccttg
cttcactgctcctctaattccagcgagaatggatcacgttcaaagccatgcccgcctcgc
ccaggggagaagggtgaaatgcatgtggtgcctgtaccattgcctttagtatctggtcta
agcagtgttagaatcaacattcctcctgatctacgaccacctgaagcaagacaaaatata
ctttttgcagtgcaagaactaggaaagcgctacccccaaggccttccgaagctacatcca
atcaacgatatgggtattcaagaacctgaactagttgacttggtacataaacttgaggac
cttgagcagaaacaatgctctcacagacttcataagtctggtcaaagtgatcaggaacta
tcttggtaccaaaggaaagcagacttgaatagtgaaattcagcaactcaagtcaaagatg
cgggattcacagctacaaaaatttagagatgaacttaagaaccgatcccgcgttctgaag
atgcttggtcatattgatgctgatggtgttctccagttaaaaggacgtgctgcctgttta
atagacacaggggatgaactgcttatcactgaacttatgttcaatggtacatttaatgat
cttgaccatcatcaagttgcttcccttgctagctgctttgtaccttgtgataaatcaagt
gagcagatacgcctaagaaatgaactttctaggccgatgacgcaacttcaggaggctgca
agaaaaatagctgaggtacaaaaagaatgcaaactggaagtaaatgtggaggaatatgtt
gaatcaacatgcagaccttaccttatggatgtcatatactgctggtcaaggggagccacc
tttgcagaggtgatggaaatgaccgacatttttgaaggaagtgtcataaggcttgctcga
aggctggatgaatttctgaatcagttgagagctgctgctgaagccgtaggggaggttaac
cttgagaagaagttcgagaaggcaagtgagagtttgcgtcggggtatcatgttttccaac
tcattgtatctgtaa
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