Sorghum bicolor (sorghum): 8078888
Help
Entry
8078888 CDS
T01086
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 isoform X1
KO
K28108
shortage in chiasmata 1
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sbi03036
]
8078888
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Meiosis-specific proteins
Others
8078888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
ABC_membrane
Motif
Other DBs
NCBI-GeneID:
8078888
NCBI-ProteinID:
XP_021316109
LinkDB
All DBs
Position
4:64181734..64190042
Genome browser
AA seq
1726 aa
AA seq
DB search
MRSRFLTADYFAPSPSAASSSDLAIALASLPFPSLPVPTLPPDPHLLNPFPFPADFLPVP
SVGDDDLDSLPFGSALTEFLADVVPQPLPLPDIPAADEGLDDYLYGRGVYGDGFSSTDPV
AFRIPKGLDDSHTKGDKEGGLSLEASAVTKRGGLLESMFEVPEVDFLLVLQKKIASLDDE
ESDACVTYSFGVPDVKIHPDFIDTDTETRIPYPTELAESIYQVEVPVKHDDDENCPYAKD
SYCMEIIGLENGQIIPQLEDSMNSWELDECSAKTAVSNIFHNIVEHLYDGAQVHLPSFGS
TEFLRSCDMDIFALVCKDAPRVEYQADKPITAKDVAEMDFVKINHDILLDKKSALYPLKP
DGTCSDFPCSILLEEVETINFPSEDAFKTLVQSLSVKAEMNTSEEIFKDDFDQAKSFYES
VVSSEWALVDDTFKSLPTPILPDEKAMRSMLPPVEVLCSLKPLPLSAADGIYLDWHLLSE
GPCNQESCSTYASMVEEVKPCSLSFELQISCQQMPALDIDFLEDFPRSAKLQHEDKKNEI
YVPGPIPHDPLANLETTQKNMLESDVRDHRHMDRLNPEKEPSLFESTSQSNGLSFYLNVR
NNTKKVRKNEDISTLDIPSSKEAAPFSTRPRVNKLIEIHPVNLSDLIQGLIKDIHVSYTS
ALQESAYFRHSLSDGQGLSISKQKLLELVTGEGSEGLYSYCQYEDKMELIVLYALKQVAY
YLCFFGLHAAYLYLGNLTGTFEHIPERLRNIQHCIGEARLKAEKQLRESHPSLSVIETIL
RSNTQIGRKILIVSDRAFWFPLGQKLTAMKITYLQFGTYHSTTYSDPVSKTNSKTCMLEE
LGKSDCILLDNKNIPASFPFSEFCMVLEYGGPNKSSILLSLAPKLDGLPPLHFLYVTVDD
EDLPNALVEDNHIDQDLKSTLVIINHFFADAVLHTLQKDLQEKMNKMRIVDSLNFIPATN
QEQHLQTNHLTADSSKKIPADVQLHNQGNLNEKNIVDSHNFVAASEQLNTLNQISIANSQ
NFVPTVEKSSSTSSVSANVIKAPRDNQSAGVLPLCEKMDSTKAGRLPGPEAVIVVNTGNL
GKNMLFSRRSSYQQILALERGGMQVVERDVDLPVDLILTAAVCLLWYDTRTSGSSELTVS
SDTSGITNFVEDIATNILMALSFCFCGCIMVFEGENHLLSAVLGASDSLYASAASLDMNL
QLFFSQTPKSTDQIILNCIQNAVRINQAPCPQIPESESLVESFVTAFPSVSPLSAHMILS
SGRLLDFLRWSHEQRTQAVEKYHLPPQSVSLFSALCKFGELGESKSVMTECSSVDSDISS
ALLESARKKKRRGAQDFSAAVSHPACTNPCTQLHGDCVENDKVFSPPKLRKFSHIEDMMP
DLPEVFTIDQRLNMGSEGVSCQPRKYDVDAVTGIHIIDDDFINELTPNFRTYNERASSMV
DTCNFSRQSELGAKQPIRSTFPASMPSACITSSHPTFPSALEINNDPGNWDVSCGINQTW
TDNVHGDFATSSGRNYLGSRYHEPRQEVMQTPASSLSFLKQNFGCHGASQGSGWEMDYIR
QMNENRKAHQEQSRCNVSATWSRDGSSRILSVPPIESFRYQRKTDTPFRDQSPSDIESFR
YRRNTNTLLRDQGPSNEAHRYGKGRGRTKSQSHRVRKDFKAQPSINHEKSIVPSIEPTWT
PLDKRARQKLTFATHGNEKQTKLVWRHQSSPGVGCGFPKRYQEEGT
NT seq
5181 nt
NT seq
+upstream
nt +downstream
nt
atgcggagccgcttcctcaccgccgactacttcgcgccgtcgccctcggccgcctcctcc
tccgacctagccatagcgctagcatccctgcccttcccttccctcccggtcccgactctt
cctcccgatccccacctccttaacccattccccttccccgccgatttcctccccgtcccg
agtgtaggcgacgatgatctcgactcgctccccttcggctccgcgctcaccgagttcctc
gccgacgtcgtcccgcagcccctgcctctgccggatatccccgccgccgacgagggctta
gatgattatctctacggtaggggtgtgtacggcgatggtttcagctctacggatcccgtt
gctttcagaatccccaagggactggacgacagccacacaaagggcgataaggaaggggga
ctcagtttggaggcctcagcagttaccaagcgagggggcctgttggagtccatgtttgag
gttccagaggtcgatttcctgttggttttgcagaagaaaattgcatcgcttgatgatgaa
gagtcagatgcttgtgtcacctattcgtttggtgtcccagacgtgaaaatccatccggat
ttcattgatactgatactgagacaagaataccatatccaactgaacttgcagagtcaatt
tatcaagtagaagtccctgtaaagcatgatgatgatgagaactgtccttatgctaaagat
agctactgcatggaaatcataggactagagaatggtcaaataataccccagttggaggat
agtatgaattcttgggagcttgatgagtgctcagcaaagacagcggtatccaatattttt
cataatattgttgaacacttatatgatggagcacaagttcatcttccatcatttggctca
actgagttcttgagatcatgtgatatggacatttttgccttggtttgcaaagatgcccca
cgtgtggagtatcaagcagataaaccaattacagcaaaggatgtagcagaaatggatttt
gtgaagatcaatcatgatattttacttgataaaaagtcagcattataccctctcaagcct
gatgggacctgttcagattttccttgctccattctcttggaggaagtagagaccatcaac
tttccttctgaggatgcctttaagacacttgttcagtcactgtcagtgaaagctgagatg
aatacatctgaggaaatattcaaagatgactttgatcaagcaaaatctttctatgaatca
gtggttagctctgaatgggctctagttgatgataccttcaaatcactacctacacctatt
ttacctgatgaaaaagcaatgagatccatgcttccccctgtagaagtactttgctcccta
aaaccacttcctctatctgcagcagatgggatctatttggattggcatcttttatcagaa
gggccatgcaatcaggagagttgctctacttatgcgagcatggttgaggaggtaaagcct
tgcagtttaagttttgaactgcaaataagttgccagcagatgccagcgcttgacattgat
tttctggaggattttccgagaagtgcaaagcttcaacatgaggacaagaagaatgagatt
tatgttcctgggcctatacctcatgatccattagccaatttggaaacaactcagaagaac
atgctagaaagtgatgtcagagatcataggcacatggataggttgaatccagaaaaggaa
ccatcattgtttgagtcaacgtcacagtccaatgggctaagcttctacttaaatgtgaga
aataacactaagaaagtaaggaaaaatgaggatatttctaccttagacatcccctcttca
aaagaagcagctcctttttcaaccagacctagagttaacaaactcatagaaattcatcct
gtcaacctctcagatcttatccaaggccttatcaaagacatccatgtaagttatacatct
gctttgcaagaaagtgcatacttcaggcattctttgtccgatgggcaaggtttaagcatt
tcaaagcaaaagcttcttgaactggtaacaggggaaggttcagaaggcttgtatagctac
tgtcaatatgaagataagatggagcttattgtactgtatgcattaaaacaggttgcatat
tacctatgtttctttggtctgcatgctgcctatctgtatcttggcaatttgactggaaca
tttgaacatattcctgagaggttaagaaatattcaacactgcattggtgaagctcggttg
aaagctgagaagcaactacgagagtctcatccgtcattatctgtcattgagacaatcctt
agatctaatacccaaatcggccgaaagatccttatagtgtctgatagagctttctggttt
ccattgggtcaaaagctaactgccatgaagataacatatcttcagtttggaacataccat
tcaaccacttattcagatccggtgagcaagacaaactctaaaacatgtatgctggaagaa
ttagggaaatcagactgcattctgctagataacaagaacatcccagcttcattccctttc
agtgagttttgcatggtactggaatatggaggtccaaataaatcatctatcttgttatct
ctagctcccaaattagatggtttgccaccactgcatttcctctatgtcacagtggatgat
gaagaccttccaaatgctcttgtcgaggacaatcacatagaccaggatctgaaatccaca
ttggtgattatcaatcactttttcgcagatgctgttttgcatacacttcagaaagacttg
caagagaagatgaacaaaatgcgcattgttgattcattaaactttataccggcaacaaat
caagagcaacatctccagaccaatcatctcactgctgattcatcaaaaaaaattcccgca
gatgttcaactgcacaatcagggaaatctgaacgaaaagaatattgttgattcacacaac
tttgtggctgcatctgaacagctcaatacgttgaaccaaataagcattgccaattcacaa
aattttgtgcctacagttgagaagagcagttcaacttcttctgtatctgcgaatgtgata
aaagctccccgagacaaccaatctgctggtgtcctgcctctctgtgagaaaatggacagc
accaaagcaggaagattacctggcccagaggcagtgattgttgtaaatactggaaatctt
ggaaagaatatgcttttctctcgaagatcatcttatcagcagatactagctttggagaga
ggaggtatgcaggttgtagagcgagatgttgatctgcctgtggacctaatacttaccgct
gcagtttgtttactatggtatgatacaagaacctctggatccagtgaattaacagtatca
tcagacacatctggcataacaaattttgtagaggatattgctaccaacattctgatggca
cttagcttctgtttctgtggctgcataatggtcttcgagggtgaaaatcacttgctttct
gctgtattgggggcatctgattctctatatgcttcagctgctagcctggacatgaacttg
cagctattcttttcacaaacgcccaaatcaacagatcaaatcattctcaattgcatccag
aatgcggttaggataaatcaagctccttgtccacaaatacctgaatcagaaagtctggtt
gagtcatttgtcacggcattcccttcagttagtcctctgtctgcacacatgatactttct
tctggccgtcttctggatttcctcagatggtcacatgagcaacgtactcaggctgttgaa
aagtatcatttgccgccacagagcgtttctctcttcagtgctttgtgcaaattcggtgag
ctaggtgaatcaaagtctgttatgactgaatgctcttctgtagattcagatatcagtagt
gcattgttggagtctgcgaggaaaaagaaaaggcgtggcgcacaagacttttcagcagca
gttagtcaccctgcttgcactaatccctgtactcaattgcatggtgattgtgtagaaaat
gacaaggtattctcaccacctaagttaaggaaattctctcacatagaggatatgatgcct
gacctccccgaagtctttacgattgatcaaaggttgaatatgggtagtgaaggtgtctct
tgtcagccaagaaagtatgatgtggatgctgtaactgggattcatataatagatgatgac
ttcatcaatgagctgactccaaatttcagaacatacaatgaaagggctagcagtatggtg
gacacatgcaatttctctaggcaatctgaattgggagctaaacaaccaatcagaagtacc
tttcccgccagcatgccatcagcctgtataacttccagtcatccaacatttccatccgca
ttagagatcaataacgaccctggtaactgggatgtttcatgtggtataaatcaaacatgg
acagataatgtgcatggggatttcgccacaagctctggcagaaattatctgggtagcaga
tatcatgaaccaagacaggaagtaatgcagactccagcatcttcactttccttcctgaag
cagaattttggttgtcatggagcatcacaaggctcaggctgggaaatggactatataagg
cagatgaatgaaaacagaaaagcacaccaagagcaatctagatgcaatgtttcagcaaca
tggtcaagggatggctcctctagaattctgagtgttcctcctattgaatctttcagatat
caaagaaaaacagatactcctttcagggaccagagcccttcagatattgaatctttcaga
taccgaagaaatacaaacacgcttttgagggaccagggcccttcaaatgaggctcacagg
tatgggaaaggcaggggaagaactaaatcacagagccatagggtaagaaaggatttcaag
gcacagcctagtataaatcatgaaaagagcatagtgccatccatcgagccaacatggact
cctcttgacaagagagcaagacaaaaacttacatttgcaacacatgggaacgaaaaacaa
accaagctggtctggagacatcaaagcagccccggtgttggatgtggcttccctaagagg
taccaggaagaaggtacgtag
DBGET
integrated database retrieval system
