Sorghum bicolor (sorghum): 8078929
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Entry
8078929 CDS
T01086
Name
(RefSeq) E3 ubiquitin-protein ligase RZF1
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sbi04131
]
8078929
04121 Ubiquitin system [BR:
sbi04121
]
8078929
Enzymes [BR:
sbi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
8078929
Membrane trafficking [BR:
sbi04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
8078929
Ubiquitin system [BR:
sbi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
8078929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-RING_UBOX
zf-rbx1
Zf_IFT144_1st
zf-RING_5
zf-Nse
zf-ANAPC11
zf-RING_16
zf-C3HC4_3
Prok-RING_1
VPS18_RING_C
Motif
Other DBs
NCBI-GeneID:
8078929
NCBI-ProteinID:
XP_002452884
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All DBs
Position
4:64715532..64717385
Genome browser
AA seq
318 aa
AA seq
DB search
MSATTPAPARHRTCRMYWCYQCGRALRIISYPSTDVFCPRCFGRFLHEIDPTPARPAFPP
PHFLPHPFHPQHQYDGHPRRWVIYGGEPTTTTTVPGRAFRQPATSQAPATPPAPAPVRRR
VPSPPPVPRRPSTPPAIDPGNYFTGPNLNNLIEEITQNDRPGPAPAPSSAIDSLPTVRIT
GAHLSDGSQCPVCKEDFELGEAARQLPCKHVYHSDCIVPWLRLHNSCPVCRYQLPGAGSN
GGGSLQAAPRGGSNGNNRNREREREPATLVRWGPFSWLFPPREMDDPDDHAWEHERRGRH
DAADAGAFYAWWRSLFLI
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgacgacgcccgcgcccgcgcgccaccggacgtgccgcatgtactggtgctac
cagtgcggccgcgcgctccgcatcatctcctacccgtccaccgacgtcttctgcccgcgc
tgcttcggccgcttcctccacgagatcgaccccacgccggcgcgccccgcgttcccgccg
ccgcacttcctcccgcacccgttccacccgcagcaccagtacgacggccacccgcgccgc
tgggtcatatacggcggggagccgacgacgacgacgacggtaccaggccgcgcgttccgc
cagcctgcgacgtcgcaggcacctgccacgcctcctgctcctgcaccggttcgacggcgc
gtgccctccccgccgccggtgccgcggcggccgtccacgcccccggccatcgaccccggc
aactacttcacggggccaaacctgaacaacctcatcgaggagatcacgcagaacgaccgg
cctgggccggctccggcgccgtcgtcggccatcgactcgctcccaacggtgcggatcacc
ggagcgcacctgtcggacggctcgcagtgccccgtgtgcaaggaggacttcgagctcggg
gaggccgcgcggcagctgccgtgcaagcacgtctaccactccgactgcatcgtgccgtgg
ctccgcctgcacaactcctgcccggtctgccggtaccagctgccgggagccgggtccaac
ggcggcggcagcctgcaggccgcgcctcgcggcggaagcaacggcaacaacaggaacagg
gagagggagagggagcccgcgacgttggtgcggtgggggcccttctcgtggctgtttcca
ccgcgcgagatggacgaccccgacgaccacgcgtgggagcacgagcggcgcggcaggcac
gacgcggccgacgccggcgcattctacgcttggtggcgctctctgtttctcatatag
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