Sorghum bicolor (sorghum): 8078944
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Entry
8078944 CDS
T01086
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi04120
Ubiquitin mediated proteolysis
sbi04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
8078944
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
8078944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbi04121
]
8078944
Enzymes [BR:
sbi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
8078944
Ubiquitin system [BR:
sbi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
8078944
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
8078944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
EIF3I
Beta-prop_HPS5
zf-C3HC4_2
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
zf-C3HC4
WD40_like
WD40_RFWD3
Beta-prop_WDR75_1st
zf-C3HC4_3
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
eIF2A
NBCH_WD40
Beta-prop_DCAF12
Beta-prop_SCAP
zf-RING_5
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
U-box
zf-rbx1
zf-RING_10
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
8078944
NCBI-ProteinID:
XP_021315078
LinkDB
All DBs
Position
4:complement(64950339..64956595)
Genome browser
AA seq
695 aa
AA seq
DB search
MGDSSVAGALVPSVPKPEPARSGDTSVAAAATTAALALALPEEAGTRAASASPQGPPAED
EGPADRDLLCPICMALIKDAFLTACGHSFCYMCIVTHLSNKSDCPCCGHYLTKAQLYPNF
LLDKVLKKISARQIAKTASPIDQFRCALQQGNEMGVKELDSLMTLIAEKKRQMEQQESET
NMQILLVFLHCLRKQKLEELNEIQTDLQYIKEDISAVERHRKELYRTKERYSMKLRMLLD
EPTAQKMWPSPIDKASCRFPPNSRTPLSASCPGTLQNKKLDLKAQVSHQGFQRRDALTSS
DPPNPPIQSGNVIARKRRVQAQFNELQEYYLQRRRTGAQARRQEERDIVAMNREGYHAGL
QDFQSVLTTFTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSKRIKVFEF
STVVNEPSDVHCPVVEMATRSKLSCLSWNKYSKNVIASSDYEGIVTVWDVQTRQSVMEYE
EHEKRAWSVDFSRTDPSMLVSGSDDCKVKVWCTKQEASVINIDMKANICSVKYNPGSNFY
VAVGSADHHIHYFDLRNPSAPVHIFGGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDN
CPVRTFRGHKNEKNFVGLSVNNEYIACGSETNEVFVYHKAISKPAASHRFVSSDLDDADD
DPGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAP
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgggcgactcctcggtggccggcgcgctcgtgccgtccgtgcccaagccggagcccgcg
cggtccggtgacacctccgtggcggccgcggcgaccacggcggcgctggcgctggcgctg
ccggaggaggcggggacgcgcgcggcgtcggcgtcgccgcaggggccgccggcggaggac
gagggccccgccgatagggacctcctctgcccgatctgcatggccctcatcaaggacgcc
ttcctcaccgcctgcggccacagcttctgctacatgtgcatcgtcacgcacctcagcaac
aagagcgactgcccctgctgcgggcactacctcaccaaggcccagctctaccccaacttt
ctccttgacaaggttctgaagaaaatatctgcccggcaaattgcaaaaacagcatcaccg
atcgatcaatttcgatgcgcactgcaacagggaaatgaaatgggggttaaagagttagat
agccttatgactttgattgctgagaagaagcggcaaatggaacaacaagaatcagagacg
aatatgcaaatattattagtcttcttgcactgccttagaaagcaaaagctggaagagttg
aatgagattcaaactgatctacagtacatcaaagaggatataagtgctgtggaaagacat
aggaaagaattatatcgcacaaaagaaaggtactccatgaagctgcgcatgcttttagat
gagcctactgcacaaaaaatgtggccctctcctatagacaaagctagctgtcgctttcct
cccaactctcggacaccacttagcgcatcatgtccaggaactttacagaataagaagctt
gatttgaaagctcaagtaagccatcaaggatttcaaaggagagatgctctaacttcttct
gaccctcctaacccccctatacaatcgggtaatgtcattgctaggaagaggcgagttcaa
gcacagttcaatgaacttcaagaatactacctgcaaagacggcgcaccggagcacaggca
cgcaggcaagaagaaagagatatcgttgcaatgaatagagaaggctatcatgcaggtctt
caggatttccagtctgtgctaacaacgttcactcggtacagtcgtctacgtgtcattgcg
gaactaagacatggagacttgtttcactctgccaatattgtatccagtattgaatttgat
cgtgatgatgaactatttgctactgctggagtctcaaaacgtattaaagtctttgaattt
tctactgttgttaatgaaccatcagatgtgcattgcccggttgttgaaatggctaccaga
tctaaacttagctgcctaagctggaacaagtactcaaaaaatgttattgcaagcagtgac
tatgagggtatagtaactgtgtgggatgtccagacccgtcagagtgtgatggaatatgaa
gaacatgagaagagggcatggagtgttgatttttctcgtacagacccttcaatgctagta
tctggtagcgacgattgcaaggtgaaagtgtggtgcacaaaacaagaagcaagcgtgatc
aatatcgatatgaaagcaaatatttgctcggttaaatataatcctggatcaaacttctac
gttgcagttggatctgctgatcaccatattcattactttgacttacgtaatccaagtgcg
cctgtccatatttttggtggccacaagaaagcagtatcgtatgtgaaattcttatctaac
aatgagcttgcatctgcatcaacagatagcacattacgcttatgggatgtcaaggataat
tgtccggtacggacgttcagagggcacaaaaatgaaaagaacttcgttgggttgtctgtg
aacaatgagtatattgcttgtggaagtgaaacaaatgaggtttttgtttatcacaaggct
atctcaaaaccggcagcaagccatagatttgtatcctctgacctggatgatgccgatgat
gatcctggttcttatttcattagtgctgtctgctggaagagtgatagccctaccatgtta
accgctaacagtcagggaaccataaaagttcttgtacttgctccttga
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