Sorghum bicolor (sorghum): 8079212
Help
Entry
8079212 CDS
T01086
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8079212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbi03041
]
8079212
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8079212
Spliceosome [BR:
sbi03041
]
Complex C
Other components
Step II factors
8079212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11
KH_DEAH11_1st
RRM_DEAH11
Helicase_C
IBR
DEAD
OB_NTP_bind
IBR_1
zf-RING_UBOX
zf-RING_5
AAA_19
zf-C3HC4_4
zf-C3HC4_2
AAA_22
zf-C3HC4
Secretin_N
ABC_tran
AAA_30
RsgA_GTPase
AAA_29
Arc_MA
gp37_trimer
Motif
Other DBs
NCBI-GeneID:
8079212
NCBI-ProteinID:
XP_002463194
LinkDB
All DBs
Position
2:complement(73502718..73511088)
Genome browser
AA seq
1750 aa
AA seq
DB search
MRRSQDRGLFRPPDWVPRPPHHHRDHHYHNEHRYPPHSHPHRDRHYSTEHRYQPRAQHQR
DCHVQPPPPPSQFEVLLVRPGSDLSAPTAIEVEALVAGLPSPAPASISVHSSGRHAARLV
FASISDAAAAARELWALRLEGLHLLTLDLPHPALAAHASPRIASLFASHASRLLDSDLVA
LSAARSAELAASIRDVKQRLGSRNRFRDFHLLDLEKKTLESEKKLIDAKIAEYKEAMLSI
QRAMSPGSGDKEEGVNLFGAVEGADVDFVRVHMMLLRECRRLKEGLPIYAYRRRILNHIL
ANQVMVLIGETGSGKSTQLVQFLADSGLAGGGSIICTQPRKLAAISLAHRVDEESKGCYG
ERSVLSYSTLLNSPQGFGTKIIFTTDSCLLHYCMSDRSLNGISYIIIDEAHERSLNTDLL
LAMIKKKLLDRLDMRLIIMSATADADRLAEYFYGCQTFHVKGRTFPVEIKYVPDISAEAS
LNSVSSMSSVASATASYVTDVVQMVNIIHKNEEEGAILAFLTSQLEVEWACETFSDPNAV
VLPMHGKLSSVEQNLVFKSYPGKRKIIFCTNIAETSLTIKEVKYVVDCGLAKEYRFVPSS
GLNVLKVNWISQSSANQRAGRAGRTGAGKCYRLYPESDFGMMEAHQEPEIRKVHLGTAVL
RILALGVTDVKYFEFIDAPDPEAINMAVHNLEQLGAIEYKCSGFELTDTGRDLVKLGIEP
RLGKIMLDCFSYGLMKEGLVLASVMANASSIFCRVGTNEEKYKADRLKVPFCHPDGDLFT
SLAVYKKWEAGHDNKNMWCWQNCINAKTLRRCQETISELEKCLMHELNIIVPSYWSWNPE
EPTMHDTSLKKIILSSLRGNLAMFSGHEKFGYQVISADQPVQLHPSCSLLTYGSKPEWVV
FSEILSVPNQYLVCVTAVDRNDVCTVHSMSSFIKQLEESKLQRKVITGIGNKSLRRFCGK
CGQNLQKIISLLREDCRDDRIMVDLDFSSSEVSLFAKEHDMEAVFCMVNDALELEAKMLR
DECDERRCGGSTIALFGSGAEIKHLELGKRCLTVEILHQNARDIDEKELIGLVYSHVPGI
ANFHKLGNFQSNADETKWGRFTFLKPDFADDAISKLNGIEFHGSSLKVGPVSAYNHSGLP
FPAVRAKVSWPRKPSRGLALVTCASGEAEFIVKDCFALGVGGRYINCEISKKYANCVFVT
GVPLHVTEPELYDAFRSTTTRRILDIRLLRGAPTASSSDSECAEALMRAISLFMPNRNFP
GQNFRVHVIPPEEKDSMMRATITFDGSFHREAARALDHLQGSVLPCCLPWQIIQCQHVFH
STVSCPMRIYNVISQEVGVLLESFRSEKGVSYNLEKNENGHFRVKLTANATKTIADLRRP
LELLMKGKIINHPDLMLSTVQLLWSRDGMEHLKSVEQETGTYILYDRQSLNIKVFGSTDK
VAAAEEKLVRALIQLHEKKPLEVCLRGQNLPPNLMKEVIKKFGADLEGLKSEVPAVDLQL
NTRRQTLYVRGSKEDKQRVEEMISELIASSDHNAPLPSKNACPICLCELEDPFKLESCGH
MFCLACLVDQCESAMKSQDGFPLCCLKNGCKKLLLLADLRSLVPDKLDELFRASLNAFVA
SSAGLYRFCPTPDCTSIYQVAAAGAEDKPFVCGACSVETCTKCHLEYHPFISCEAYKEYK
ADPADATLLQWRKGKENVKNCPKCGYTIEKAEGCNHVECRCGCHICWNCLENFKSSEECY
GHLRSVHLSY
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgatctcaggaccgcggactcttccgcccgccggactgggtcccacggcctccc
caccaccaccgcgaccaccactaccacaacgaacaccggtatccgcctcactcacacccc
caccgcgaccgacactacagcaccgaacaccggtatcagccccgtgcccagcaccagcgc
gactgccacgtgcagccgccccctccgccgtcgcagttcgaggtactcctcgtccgcccg
ggctccgatctgtccgccccgaccgccattgaggtggaggccctcgtcgcgggcctccca
tcgccggccccggccagcatctccgtccactcctccggtcgccatgccgcgcgcctcgtc
ttcgcctccatctcggacgccgcggccgccgcgcgcgagctgtgggcgctccgcctcgag
gggctccacctcctcaccctcgacctcccgcaccccgccctcgccgcccacgcctcgccg
cgcatcgcctcgctcttcgcctcccatgcctcccgcctcctagactccgacctcgtggcc
ctctcggccgcccggtccgccgagcttgcggcgtccatacgggatgtaaagcaacgtctg
ggctcgcgtaaccgcttccgcgatttccatctgctggacctcgagaagaagacactggag
tctgagaagaagttgatcgatgccaaaattgccgagtacaaggaggcgatgttgtcgata
cagcgcgcaatgtcccccggatcgggggacaaggaggagggtgtcaacttgtttggagct
gtggaaggtgcggatgtggactttgtgagggtgcatatgatgctgctgcgtgagtgccgg
aggcttaaggagggcctgccgatctatgcataccgcaggaggattcttaaccatattctt
gctaatcaggtcatggtcttaataggagaaacaggttctgggaagagcacacaattggtt
cagtttcttgctgactcaggtcttgctggtggtggctccatcatatgtactcaacctcgg
aagcttgctgctatatctttagcacatagagtagatgaagaaagtaagggctgttatggg
gaacgttctgtgctgtcatattcaaccttgctaaattctcctcaaggttttggcactaag
attatattcaccacagacagttgtcttctgcattactgcatgagtgataggagtctgaat
ggcatttcctatattattatagatgaagctcatgaaaggagcttgaatactgatcttctg
ttagctatgattaagaagaagctgcttgataggctggatatgcggctcattataatgtct
gccactgctgatgctgacagacttgctgaatatttttatggctgtcaaacatttcatgtt
aaagggcgaacttttcctgttgaaattaaatatgtcccagatatatcagcagaggcttca
ttgaatagtgtatcaagtatgtcctctgttgcttctgctaccgcttcttatgttactgat
gttgtacaaatggtaaatatcatccataagaacgaggaagagggtgctatacttgctttt
ttgacatctcagctggaagtagaatgggcctgtgaaacattcagtgatccaaatgctgtg
gtacttccgatgcatggaaagctttcttctgtagagcagaatcttgtcttcaaaagctac
cctggaaagagaaagattatcttctgcacgaatatagctgaaacatcattgaccataaaa
gaagtgaagtatgttgttgattgtggcttggccaaggaatacagatttgttcccagtagt
ggtctcaatgtactcaaagtcaattggatttcccaaagctctgctaatcaacgtgctggc
cgtgctggccgaaccggagcagggaagtgttacaggctctacccagaatctgacttcggt
atgatggaagcgcatcaagaacctgaaattcgtaaagttcatctcggcactgctgttctg
agaatacttgctttgggcgttacggatgtaaaatattttgagttcattgatgccccagat
cctgaggctatcaatatggctgtgcataatcttgaacaacttggtgctatagaatataaa
tgtagtggatttgagctaactgacactggacgtgatctggtcaaattaggcattgagcca
aggcttgggaaaatcatgcttgattgcttcagctatggtttgatgaaagaaggtttagtc
ctagcctctgttatggcaaatgctagtagcatattttgtagagtgggtacgaatgaggag
aaatataaagctgaccgcctgaaagttcctttctgtcaccctgatggagaccttttcact
tcacttgctgtgtataagaagtgggaggctgggcatgataacaaaaatatgtggtgctgg
cagaattgtatcaatgccaagaccctgaggaggtgccaggaaactatatctgaacttgaa
aaatgtctaatgcatgagctaaatattatcgttccaagttattggagttggaaccctgag
gagcctactatgcatgatacttcactaaagaagattattctatcatctcttagaggtaat
cttgctatgttttctggacatgagaaattcgggtatcaggtgatttcagcagatcagcct
gtgcaacttcacccttcatgctcattgctcacttatggcagcaagcctgaatgggtggta
ttttcagaaatcttgtcagtcccgaatcaatatttggtatgtgtaactgctgttgatcgt
aatgacgtgtgcacagttcactccatgtcttcttttattaagcaactggaggagagtaaa
ttgcagcggaaagtcattactgggattggaaataaatcgctgagaagattttgtggtaaa
tgtggccaaaatctgcagaaaatcatctcacttctgagagaagattgcagagatgaccgc
ataatggttgatttagacttcagtagcagtgaagtttcattatttgctaaagagcatgac
atggaagcagtcttttgcatggttaatgatgctttggaacttgaagctaaaatgctgagg
gatgaatgtgatgagagaagatgtggtggctctactattgccctatttggctctggtgct
gaaatcaagcatttggaacttgggaagagatgcctaacagtggagattctgcaccaaaat
gctcgtgatatagatgaaaaggaacttattggtttggtatattctcatgttcctggcata
gctaattttcataaactcgggaattttcagtcaaacgcagatgaaacaaagtgggggagg
tttacattcctcaaaccagattttgctgatgatgccatttcaaaattgaatgggattgag
tttcatggttcctctctaaaggtgggtcctgtaagtgcttacaaccactcagggctacca
tttcctgcagtaagagctaaagtttcttggccacgtaagccaagcaggggacttgcactt
gtaacatgtgctagtggggaagctgaatttattgtaaaggactgctttgcccttggggtt
ggtggaaggtatatcaactgtgagattagtaaaaagtatgcaaactgtgtctttgtcaca
ggggttccattgcatgtaacagagccagaattgtatgatgcttttcgtagtacgaccact
aggagaatccttgacatccgcttgcttagaggagcacccacagccagctcttccgattct
gaatgtgcagaagcactgatgagagcgatatcactattcatgccaaataggaattttcct
ggccaaaatttccgtgttcacgtgatccctccagaagagaaagactcaatgatgagagct
accataacctttgatggaagctttcacagagaggctgcaagagcactggaccatcttcaa
ggaagtgttcttccttgttgtcttccttggcagataatccagtgccagcatgtatttcat
agtactgtctcctgtccgatgcgcatatacaatgtcatcagccaagaagttggtgttcta
cttgagagcttccgtagtgaaaaaggtgtgtcatacaatttggagaagaacgagaatggt
catttccgtgttaagcttactgcaaatgccacaaaaacaatagcagatttgagaaggcct
cttgagcttttgatgaaaggaaaaattataaaccatcctgatctgatgttaagcacagtt
caactgctatggtcccgtgatggtatggaacatttgaaatcagttgaacaggagactggc
acttacattctgtatgacaggcaaagtctgaatattaaagtctttgggagcactgataag
gtggctgcagcggaggaaaaattggttcgtgcacttatacagctccatgagaagaagcct
cttgaagtttgtctccgtggccagaacctcccaccaaacttgatgaaggaagtgattaaa
aagtttggagctgatttagaaggactgaagagtgaggttcctgcagtagatcttcagcta
aacacacgaagacagacactttatgttcgaggcagcaaggaggacaagcaaagggtggaa
gagatgatctctgaactgatagcctctagtgaccataatgctccactgccatcaaagaat
gcatgtcctatttgcctgtgcgagctagaagatccttttaagcttgaatcctgtggtcat
atgttttgtttggcatgcttggtggatcagtgtgaatctgccatgaaatcgcaagatggc
ttccctctttgttgcctcaaaaatgggtgcaagaagctcctcctcctagctgatctgagg
tctcttgtgcctgacaagctggacgagttgttcagggcttccttaaatgcatttgttgca
tctagcgcaggattataccgtttctgccccacacctgactgcacatccatttaccaagta
gctgctgcaggtgcagaagacaaaccctttgtctgtggggcttgctctgtggagacctgt
accaagtgccatctcgagtaccatccttttatctcttgtgaggcatacaaagagtacaag
gcagacccggcggatgcgactctgcttcaatggcgcaaagggaaggagaacgtaaagaat
tgccctaagtgtggatatacaattgagaaagctgaaggttgcaaccatgttgagtgcagg
tgtggctgccacatttgttggaattgcttggagaacttcaagagcagtgaggagtgttat
ggccatctcaggtctgtgcacttatcctattag
DBGET
integrated database retrieval system
