Sorghum bicolor (sorghum): 8079325
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Entry
8079325 CDS
T01086
Name
(RefSeq) polyadenylate-binding protein 3
KO
K13126
polyadenylate-binding protein
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03015
mRNA surveillance pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8079325
09123 Folding, sorting and degradation
03018 RNA degradation
8079325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8079325
03041 Spliceosome [BR:
sbi03041
]
8079325
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
8079325
mRNA cycle factors
Stress granule specific factors
8079325
Spliceosome [BR:
sbi03041
]
Complex C
Other components
Complex C specific factors
8079325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_7
RRM_Nup35
RRM_RdRP1_2
Motif
Other DBs
NCBI-GeneID:
8079325
NCBI-ProteinID:
XP_002438617
UniProt:
C5Z568
LinkDB
All DBs
Position
10:complement(51498383..51501881)
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AA seq
631 aa
AA seq
DB search
MASPSTTPRSTIAAAAVPVAEGTPAAAAVLPPLGSISSLYVGDLAESVDETQLHAVFSQV
APLVSVRVCRDIVSGVSLGYGYVNFYSRQEATCALEALNFAPLSGKHIRVMFSNRDPSLR
KSGRANLFVKNLEPSIDSKNLYEMFSSFGTILSCKVATDSAGQSKGYGFVQYETEESAQD
AINRLNGMLANDREMFVGLHMRRRNREVKFTNVYIKNLPTEFSDDDLRQEFAPFGEITSA
VVMRDVNGVSKCFGFVNFEKPEFALEAVKKANGKVINDKTLYVGRAQKKAERQAELKTKF
KQEDRDKKVDKPNGINLYLKNIDDSINDEGLKILFEEFGQVTSCKVMVDAQGRSKGSGFV
LFATAEAGHSAINGMNGRIVGKKPLYVGLAQPKEERRAMLMAHFAQRNLAMAASPYAGPQ
QVYFGHPAPGQIPPQAAVFGFPQHFVPAMGPVSPVMMPHNMQRSRYPRQRTGGPAAYRQQ
QAMIHANANHNIRYMPNARHGAYPAMLPQGFPSAMVSQQHDGSSITTAVASAEPADQQQI
LGNKLYALVEQLEHDHAGKVTGMLLEMDKVKILQLLQSPEVLRAKVREAMDVLQRTKAEG
SADPAAAAATATAEGSADPATAADATPTVNA
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtccctcgacgacgccccggtccacgatcgcggcggcagcggtccctgttgcg
gaggggacaccggcggcggcggcggtactgccgccgctcggctcgatttcgtccttgtac
gtgggcgacctggctgagagcgtcgacgagacgcagctacacgcggtcttcagccaggtc
gcgcccctcgtgagcgtgcgcgtctgccgggacatcgtcagcggcgtctcgcttgggtac
ggctacgtcaatttctactcacgccaggaagctacttgtgcactggaagctttgaatttt
gccccattgagtggaaagcacatccgggttatgttctctaaccgggatccaagcctgcgt
aaaagtggacgtgctaacttgtttgttaaaaaccttgagcctagcattgatagcaagaac
ctatatgagatgttctcctcctttggcaccatattatcttgcaaggtggccactgattcg
gctggtcagtcgaaagggtatggttttgtacaatatgagactgaggaatccgctcaagat
gcaattaaccgacttaatggtatgctagcaaatgacagagaaatgtttgtgggcctacac
atgcgccgacggaacagagaagtcaagttcacaaatgtatatataaagaacttgcccact
gaattcagtgatgatgatcttcgccaggagtttgcaccgtttggtgaaattacaagtgct
gtggtcatgagggatgttaatggtgtctccaaatgttttggttttgtaaattttgaaaaa
ccagaatttgctttagaagcagtgaaaaaggctaacggaaaggtcatcaatgataagact
ttatatgttggaagggctcaaaaaaaggcagaaagacaagccgagctgaaaacaaaattt
aaacaagaagacagagataagaaagtagacaagcctaatggtattaatttgtacttgaag
aacattgatgatagtataaatgacgaagggttaaaaattttatttgaagaattcggtcaa
gtaacttcatgcaaggtcatggttgatgctcaaggaaggagcaagggttcaggatttgtg
ttgtttgctactgctgaagctggccatagtgcgataaatggaatgaacggtaggattgtt
ggaaagaaaccgctctatgttggtttagctcaacctaaggaggaaagaagagccatgcta
atggcacattttgctcaacgtaacctggcaatggcagcttctccatacgccggacctcag
caggtttattttggtcaccctgcacctggccagatcccacctcaggctgcagtctttggg
tttccgcagcacttcgttccagcaatggggcctgtctctcccgttatgatgccacacaac
atgcagagatcgaggtaccctcgccagaggacgggtggtccagctgcatatcggcagcag
caggcgatgatccacgcaaatgcaaatcacaacatcaggtacatgccgaacgccagacat
ggggcttaccctgcaatgctgcctcagggcttcccaagtgccatggtgtcgcagcaacac
gatggcagcagcataactactgctgtagcatctgctgaaccggcagaccaacagcagatt
ctgggcaacaagttgtacgcgctggtcgaacagctcgagcatgatcacgctggcaaagtg
accggaatgctgctcgagatggacaaggtcaagatcctacagctgttgcaatctccggag
gttctccgggccaaagtccgtgaagccatggatgttctacagcgaaccaaagccgaaggc
tcagccgatcctgctgctgctgctgccaccgccacagcggaaggctcagccgatcctgct
actgctgccgacgccacaccaaccgtgaacgcctga
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