KEGG   Sorghum bicolor (sorghum): 8079734
Entry
8079734           CDS       T01086                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase FANCM isoform X1
  KO
K10896  fanconi anemia group M protein
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    8079734
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sbi03400]
    8079734
DNA repair and recombination proteins [BR:sbi03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    FA core complex
     8079734
SSDB
Motif
Pfam: Helicase_C ResIII DEAD Cas3-like_C_2 Albumin_I_a
Other DBs
NCBI-GeneID: 8079734
NCBI-ProteinID: XP_021317148
LinkDB
Position
5:6729387..6743685
AA seq 1472 aa
MSAPPRLAVDDFYDDDGFDWEAAVQEIDRACALASASAPAPAPAPVHHPLPPRAPEPSAA
GGVGAARQSTLDRFVDSFTKRRLEKERPAPAPAQAPPWGVGVDPGGGGGRVERPGVRAGE
GSSRQAGEKAVEDRFVESFTRRQREKERAAAEVAPAPAPAGGRGRPAARAGKGCSGRGRG
KRAGKGCSRRPNVEVDYGPCAIALDHEAVKTWIYPTNVEVREYQRYMVEKALFTNTLIAL
PTGLGKTFIAAVVMYNYFRWFPEGKIIFTCPSRPLVTQQIEACHNTVGIPQEWIIDMIGD
RCPSTTRSVHWKSKRVFFVTPQVLHNDIQSGICMVQQIVCLVIDEAHRASGNYAYCMVIR
ELLAARVPLRILALTATPGSKHSKIQSVLDNLSISELIYCDEEDSRVNQYVNTRKVEVVQ
VPSGTDATQVADMLLDIVRPHINRLRDAGVIDHRDYANWTQYELLHFKDKFKEAPPPNIH
EIERGEIERSFVILGPLCHTRRLLLSHGTQFAHVYLDKKLKGGFLNLMRKNDLFWRLKQK
MKLSSSQGTGMTPKVEELKRLMLEHFMNGIGTDSNSTSSKIIIFSHYRESVNEIYCSLQN
IDDKLIKPVKFIGQSSAGNNQLKGQSQKTQQAILQKFRSGVYNVLVATSIGEEGLDIIEV
DLVICFDANVSPLRMIQRMGRTGRKNEGRVVVLAYEGQELQGYRKKQGDCRTMRKLLHNS
ERFEYHASPRMVPHVYKPEVKYVKLTIDKYIPHLKKKRVAAKEASPSPWKMSEADGQMIA
RYFGVCKEEVWRPSLVAFPRFQLYPSVVHKVPHSFRTTDMLTDAMQQLQDPSLFRTKCEI
PLQEPANVAAVEEGLELEGLSAINGSEEMPQECDGSETSPRVVWNENVSVPGSPVKKYPI
HTFFSGDYVTVDRRGSVSITFVPVLPQKFAFSKDIKNAVWNNKDQNKAEPYISAASVSRT
TVEFVHPVANTDKHMFVDNVSTVAMHSPEYSGHCDNVDDNHVFTTVPPKTLTSPREKMDT
PCNVKLPESTYSYQEDMELSPRLTAYMEEGIVPESPVVEVSDLHLEMDEAADFGAVPKRG
SPKSCDERAHANVAGCHKGPLNFEKNGQLLSGANEPGGSSRLYVLDQTRAKTEEPMHPSN
VKMTTPTTRHSPSGNLLYDSFSGDYQLRSGGDASGSVQQAPKYRRLCKYGDKIKRVSSMS
LDGCHDRFGECNIANKDRPNQIKHAMGAKRKTKRRLDAYIDEEVEVSEDADVSEDEDDNQ
TEDKYEDSFIDDQAIPTECTQTEQGGGHNGDMMGFYRQSLLTQTPVVLPSRYLDVSDNSA
SRTGNASCSSEARHNSTETPKDIQTHHSMNPSPSYSVVQDRCETAIANCESSTKLDCRKR
RLSFQQPPAIPVINLEPEPAPEPCSHVAIGATDDLYFDDDFFENLDLDAIEAQATEQLRQ
KTTQSTQKPVEIKIKNASDMSFAPPSFDLGFE
NT seq 4419 nt   +upstreamnt  +downstreamnt
atgtctgcgccaccgcggctcgccgtcgacgacttctacgatgacgacggcttcgactgg
gaggccgccgtgcaggagatcgaccgagcctgcgccctcgcgtcggcctccgcccccgcc
cccgccccggcgccggtgcatcatccgctgccgccgcgcgcccccgagccatcggcggcg
ggcggcgtcggcgcggcgcggcagtcgacgctcgaccgcttcgtcgactcattcactaag
aggcggctggagaaagagaggcccgctccagcgcccgcgcaggcgccgccgtggggcgtg
ggggtggacccaggtggcggtggcggccgcgtggagcggccaggtgtccgcgcgggcgag
ggcagctcgcgacaggcgggcgagaaggctgtggaggaccgattcgtcgaatccttcacc
aggaggcagcgggagaaggagagggctgcggcggaggtggcaccggcaccggcaccggct
ggtggtcgggggcgccctgcagctcgtgctggcaagggatgctcgggtcggggtcggggc
aagcgtgctggcaagggatgctcccgtcggcccaatgtggaggttgattatggtccctgc
gccatcgccctggaccacgaggctgtgaagacatggatctatccaactaatgtagaagtc
cgagagtaccagaggtatatggttgaaaaggctctgtttaccaatacgttaatagctttg
ccaactggacttggcaaaacttttattgctgcggtagtgatgtacaactactttcgatgg
tttcctgaagggaaaataatatttacttgcccttcacgtcctcttgttacccagcaaatt
gaggcatgtcacaatacagtgggaataccacaggagtggataatagatatgataggagat
cgatgcccttccaccactcgatcagttcactggaagtcaaaaagagtgttctttgtcact
ccacaagttcttcataatgatatacaatctggtatatgcatggtacagcagattgtttgc
ttagtgatagatgaggctcatcgagcatcaggaaattatgcttactgcatggttattcga
gagttgctagcagctcgtgtgcctttaaggattttagctctaactgctacaccaggatcc
aagcattcgaaaatccaaagtgttttagacaatttaagcatttcggagctgatttattgt
gatgaagaggattctagagtgaaccaatatgttaacacacgcaaagttgaagttgtgcag
gtcccttctggcactgatgctactcaagtcgctgatatgcttctggatattgtgcgccca
catattaatcgattgcgtgatgctggtgtgattgaccatcgggattatgcaaattggacc
caatatgaactgctgcactttaaggataaattcaaggaagcacccccaccaaacattcat
gaaattgagagaggggaaattgaaaggtcttttgtaattcttggcccactttgccacaca
aggaggttgcttttgagccatggaacccaatttgcacatgtgtatcttgacaagaagttg
aagggagggtttttgaatttgatgcgcaagaatgacctcttttggcgattaaaacaaaag
atgaagctttcctcatctcaaggtacgggtatgactccaaaagtagaggaattgaaaagg
ctgatgcttgagcacttcatgaatggcataggtactgattccaattcgacgagctcgaag
attattatattttcccattaccgagaaagcgtcaatgaaatatattgctcactacagaat
attgatgataaacttatcaaacctgttaaattcattggtcaaagctcagcaggtaataac
caactgaaggggcaaagccaaaaaactcagcaagctattttgcagaaatttcgatctggg
gtatataatgttttggtggcaacatccatcggcgaggaaggactagatattattgaggtt
gacctcgtgatctgtttcgatgccaatgtctcaccattaaggatgattcaacggatggga
agaaccgggagaaagaatgaagggcgagttgtggttttggcttatgaaggtcaagagttg
caggggtacagaaagaaacaaggagattgtcgaaccatgaggaagctattgcataacagt
gagagatttgaataccatgctagtcctaggatggttccacatgtctataaaccagaagtt
aagtatgttaagttgacaatagacaagtatattcctcacttaaagaaaaagagggttgct
gcaaaagaagcatcgccaagtccatggaagatgtcagaggcagacggtcaaatgattgct
aggtactttggtgtgtgcaaagaagaagtttggaggccgtcccttgttgcatttcctaga
tttcagctttatccaagtgtcgttcacaaagttccacattcatttcggacaacagatatg
ctaactgatgctatgcagcaacttcaagatccatctcttttcaggacaaagtgtgaaatc
cctttgcaagaacctgctaatgttgctgctgtggaggagggtctggaacttgaaggtctc
tctgctattaatggaagtgaggaaatgcctcaggaatgtgacggttcagaaacctcacca
agagtagtgtggaatgaaaatgtttctgtcccaggttctccagttaagaagtatcctatt
cacactttcttcagtggtgattatgtaactgtggatagaagaggcagcgtttcgattact
tttgtacctgtcctgcctcaaaaatttgcattcagtaaggacataaagaatgcagtttgg
aataacaaagaccagaacaaagccgaaccttacatatcagcagcaagcgtcagtaggaca
acagttgaatttgttcaccctgttgccaatacagacaaacatatgtttgtggataatgta
tcaactgtagccatgcattcccctgagtactctggacactgtgacaatgttgatgacaat
catgtgtttacaactgtaccacctaaaacactgacaagcccaagggagaaaatggacaca
ccctgcaatgttaaactgccggagtccacctattcatatcaggaagatatggagcttagt
ccaaggctaacagcatatatggaagaaggaattgttcctgagtctccagtggttgaagtt
agcgacctacatctagagatggacgaagctgcagactttggagctgtgccaaagcgtggt
tctccaaagtcatgtgatgagagggctcacgccaatgtagctggatgtcacaaaggacca
ttgaactttgagaaaaatggtcaattgctttctggggcaaacgagcctggtggatcatca
aggttgtatgtgctagatcagactcgagccaaaacagaagagccaatgcatccttcaaat
gtgaaaatgactactcctaccaccagacatagtccttctgggaatctgctgtatgatagt
ttctcaggtgattatcagcttagatcagggggggatgcatcgggatcagtccagcaagca
cctaagtacagaagactatgcaaatatggtgacaagatcaaaagagtctcttccatgtct
ttggatggctgtcatgataggtttggagaatgtaatattgctaataaagataggccaaac
caaataaaacatgctatgggtgcaaaaaggaagaccaagaggcgtctagatgcctatatt
gacgaggaagtcgaggtgtctgaagatgcagatgtttcagaggatgaggatgataatcag
actgaagataaatacgaagatagcttcattgatgatcaggcaattccaactgaatgcaca
caaactgaacaaggtggtggacacaatggtgacatgatgggtttctacaggcaatcattg
cttactcagaccccagtagttctaccctcaagataccttgatgtctctgacaattctgct
tctcggaccggaaatgcaagctgttcttcagaggccaggcataattctaccgagactcca
aaagatattcaaacgcatcatagcatgaacccaagcccatcctacagtgttgtacaggat
cgctgcgaaacagcgatcgccaattgcgaatcatcaactaaactggattgcagaaagaga
aggctaagcttccagcaacctccggcaatccctgttataaaccttgagccggaaccagca
ccagaaccatgttcacacgttgccatcggagccactgatgacctatattttgatgatgat
ttctttgagaaccttgatcttgatgcaattgaagctcaagcaaccgaacagttgagacag
aagactacacagtcgacacagaaaccagtggaaattaagattaagaatgcatcagacatg
agttttgcacctccgtcattcgatctaggttttgaatga

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