Sorghum bicolor (sorghum): 8079822
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Entry
8079822 CDS
T01086
Name
(RefSeq) uncharacterized protein LOC8079822 isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8079822
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
8079822
Surveillance factors
Other surveillance factors
8079822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
8079822
NCBI-ProteinID:
XP_002459004
UniProt:
C5XGX1
LinkDB
All DBs
Position
3:complement(71633116..71639969)
Genome browser
AA seq
1534 aa
AA seq
DB search
MAERKLDRPSALGKGGLSLGIEEDRAAAAAMGFVDDTKDQLHLDNSIPLSPQWLYTKPAD
GKISLPHVSSLEPAEKEVRMLEGTVDRKERRRNVFDADTGLRWLEEERETSLLGRRERKK
DVDRDVDNRKTDRRSDNVSARDNTDPRAAPASERWNDGSTRSMGNEGRRDAKWSSRWGPD
DKDKDSRSDKKVDAEKDETHADKQTFTGRLLSESDSRDKWRPRHRQESHSVGTATYRAAP
GFGSEKGRVKDSDIGFAAGRGRGNPNSVASFNRPSSAGSIGAPSVHGKSAKAAVSFCYPR
GKLLDIYRQKNMMSSFDDADMKLEEIPSITLSTAAKPLAFVAPDKVEEALLEDIRKGKVI
SSEGINGTGNKKERAKDLEEPASGIDDDKGKVSFAIAGLGQEGSSDLISEKDAFYVEGTL
PTGISTSPPMKSLEENASSNQYGITDIREGLKTDEIKSSADHDLGTKLPDDSNTLFDVPS
FEHSSEPPMPYQSSDMDIKVSGHANYPEELTLYYLDPQGGVQGPFLGADIISWYEDGYFG
LELPVRLSQAPDDVPFRPLVEVMPHLGQKLQSHIPQPGDGSAESLESSQSKFESTVPTAS
SGKSDQVSNWNSESNAVDPKRGDHEASVPSHSGWLSSLEMGKDTANTTNRQQHIPESVNQ
DAEEVLYTGRPNSSMGQSLRDLENDRADFQLAPHDPHSVVGQANLPQHDIPRESDLSPLG
LLWSELEGHPKQPLSSNVLGVNERRNPKPTAPKDIPPVNMRHGPLSRMNEVSSVRDEWPA
NFGRLDNMNDANISSRIPQVEAEHHLNFEGQMLLQQIRREQQQLQQEQLMARNNMEFSGA
FPGQVFDSLHQHRQPMNQPLSDVEHLLRVQFEIEQQQQRRQLQQEQHQRQLQQQRQAQLL
QQQQQQQQQQQQMILEQLLQQQLQGSNFGPTNMVDQVLLREHVLNELHQQPHHLQRQHDA
AIEQLIQAKFGHGLHREHHNDMLDVLSRPNQRQMLPLEQQILLGLQHEQQLQSQQLANAL
RQGREEERHLSGVWPMDDPAQFIRAGTSPNQRHGRFDLLENLQRSSSFDHHEHLDRSLSL
HERLHRGGQGIHSLERSGSLPGGGPGPNPDVINALARHHGLGQLETHGDIYPLGQMPMLP
SGVHPQQHRLQEQLPGSHIGRLERHWSDANGQLQNSLMESSRINQLQIEAEKQRRNVEMN
LAVDNPHAWAALMNKERNAEQDLSDMIHKKLVLQSQQSLGFPDVPVPAPFGRKDHFAQPV
AENPLRSVDMLSFEESLAERSLYAKSGQLAQEGSANLGTLPNNIENTGKFNLRSGSGSML
EQKHFLGIDDVQRDFPDTTSGRTSANQLVGSVSELTRVKKQGSSASLAGDDPDFAEEAVS
KWSDSGMSKGSSHSLLKRSTNQHTTSQSVPADLSSAIRLKKAGLVSSDENKMESGVASVA
QGMESSVPSNKEPGVYSMPSATNNPDASGQSFSEALKSSRKPPLQYDASESADGGPGGKG
AKKKAKKGKQIDPSLLGFKVHSNRIMMGEIVRDD
NT seq
4605 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaggaagctggatcgaccctcggcgctcggcaaaggtgggctgtcgcttggg
atcgaggaggacagggccgccgccgccgccatggggttcgtcgacgataccaaagatcag
ctgcacctggataacagcattcccctgtctcctcagtggctctacaccaaacctgctgat
ggaaagatctcactgcctcatgtgtcctccctagagcctgctgagaaggaagtgaggatg
ctcgaaggaactgttgataggaaagaacgaaggaggaatgtatttgatgctgacactggt
cttcgttggcttgaagaggagagggagacgagcctgcttgggaggagggagcgcaagaag
gatgtggaccgggatgtcgacaatcgcaagaccgatcgccgatctgacaatgtttctgca
agggacaacactgatccgcgtgcagctcctgcatctgaaaggtggaatgatggttccacc
cgaagcatggggaatgagggacgccgtgatgcaaaatggtcatcaagatggggacctgat
gacaaggacaaggactccaggtcagacaagaaggttgatgcagagaaggatgaaacccat
gctgataaacagacattcacaggaaggctgctgtctgagtccgattcccgtgataaatgg
aggcctcgtcaccggcaggaaagtcattctgtcggaacagcaacgtaccgtgctgctcca
ggctttggatctgagaaagggcgtgttaaggactcagatattggttttgctgctggaaga
ggcaggggaaacccgaactcagttgcatccttcaaccggccatcatctgcaggatcaatc
ggtgctccatctgtgcatgggaagtctgcaaaagctgctgttagtttctgctacccaaga
gggaagcttcttgatatatacaggcagaaaaatatgatgtcatcctttgatgatgctgac
atgaaactggaggaaattccttccatcacactctctactgctgcaaaacccctagccttt
gttgcaccggataaagttgaagaggctctcctggaagatattagaaagggtaaagtcatt
agcagtgaaggaatcaatgggactggaaacaaaaaagagagggcaaaagatctcgaagaa
ccagcttctggtattgatgatgacaagggcaaagtcagttttgcaattgctgggttgggt
caagaagggtcttcagatttaatctcggagaaggacgccttctacgttgaagggacactt
cctactggcatcagtacatctccgccaatgaaaagtctggaggaaaatgccagcagcaat
caatatgggattactgacattagggaaggtttgaaaacggatgaaatcaagtcaagtgct
gatcatgatcttggcactaagctacctgatgattcaaacactctgtttgatgtaccatcc
tttgagcattcttcggaaccccctatgccataccaaagcagtgacatggatataaaagtg
agtggccatgctaattatccagaagagttgacattatattatctggatccccaaggaggt
gtgcaaggtccatttctcggtgctgacataatttcctggtatgaagatggatactttggt
ttggagttacccgtacgtttgtctcaggctccagatgatgttcctttccgcccacttgtt
gaagtcatgccccaccttgggcaaaaactgcaatcgcatatacctcaacccggtgatgga
agtgctgaatctctggaatcatctcaaagtaaatttgaatccacagttcctactgcttcc
tctgggaagagtgaccaagtgtctaattggaattctgaaagcaatgctgttgatcctaaa
agaggtgatcatgaagcatcagtaccttctcatagtggttggttatcttcactggaaatg
ggaaaggatacagcaaatactactaatcgccagcagcacattcctgaatcagttaatcag
gatgctgaagaagtgttgtacactgggaggcctaatagcagcatgggtcaatccctacgg
gaccttgagaatgaccgtgcagatttccagttggcaccacatgatcctcattctgtggtt
ggacaagctaatttgccgcagcatgatatcccaagggagagtgatctgagtcctcttggc
ttactttggtctgagctggaagggcatccaaaacaacctctctcatcaaacgtacttggt
gtaaatgagcggagaaatcccaagcctacagcacccaaggacattccacctgtaaacatg
agacacgggccacttagcaggatgaatgaagtttcaagtgtgcgtgatgagtggcctgca
aactttggacggctagacaatatgaatgatgcaaacatttccagcagaatccctcaggtt
gaagctgagcatcatttgaattttgaggggcaaatgctgcttcaacagatcagacgggag
caacagcaattgcagcaggagcaactgatggcccgcaacaatatggaattttctggtgca
tttcctgggcaggtgtttgattctttgcaccaacaccgccagcctatgaatcaaccgctt
tctgatgtggagcatcttttgagagtccagtttgaaattgagcaacagcagcaacgccgc
cagctccaacaagagcagcaccaacggcagctacagcagcaacggcaagcccagcttttg
cagcaacagcaacagcagcagcagcaacagcaacagatgatcctcgagcaattgttgcag
cagcagcttcagggttcaaattttggaccaacaaatatggttgatcaagtcttacttcgt
gaacatgtattaaatgaactgcaccagcaacctcaccatttgcaaagacagcatgatgcg
gctattgaacaactcattcaagcaaaatttggtcatggccttcatagggagcatcataat
gatatgttggatgttctctcacgtccaaatcagagacagatgcttcctttagagcagcaa
attcttttaggccttcagcatgagcagcaacttcagtctcaacaattggcaaatgctctg
cggcagggcagggaggaagaaaggcacttaagtggggtctggccaatggatgatcctgcg
cagtttatccgtgcagggaccagtccaaatcagagacatggtcgtttcgatctcctggag
aatcttcagagatcgtcatcgtttgatcaccatgaacatcttgaccgcagcttatcctta
catgaacgtttgcataggggaggtcaaggtattcactccctagagcggtctggttctttg
cctggtggtggtcctggaccaaacccagatgtcataaatgccctagcacgccatcatgga
cttggtcagttggaaacacatggtgatatataccctttaggccaaatgcctatgcttcct
tcaggggttcatcctcagcaacataggcttcaggaacagcttcctggttctcacatagga
aggcttgaaaggcactggtcggatgccaatggacagttgcaaaacagtctaatggaatct
tcacgcatcaaccagttgcagattgaagcggagaagcagagaaggaatgtggaaatgaac
cttgctgttgacaacccacatgcatgggcagctcttatgaacaaggagaggaatgcagaa
caagatttgagtgatatgattcataagaaacttgtccttcaatcgcagcagtccctgggt
ttccctgatgttcctgttccagcaccatttgggcgtaaggatcactttgcacaacctgtt
gcagagaatcctctaagatcagtggacatgttgtcatttgaggagtctcttgcagaaagg
tcactttatgcaaagtcagggcagttggcgcaagagggatcagctaatctgggtactttg
cccaacaatattgagaacactggaaaatttaaccttagatcaggatctggatcaatgctt
gagcagaagcattttcttggaattgatgatgttcaaagggactttccagacaccacaagt
ggtagaacatcagccaatcaactggttgggagtgtcagtgagttaacaagggttaaaaag
cagggttctagtgcgagtttggctggggatgatcctgattttgctgaagaagctgttagt
aaatggtctgattctggcatgtcaaaaggaagctctcactccttgctaaagcgctctaca
aaccaacatactacatctcagtcagttcccgcagatctgtcttcagcaatcaggctgaag
aaagcaggccttgtgtcctctgatgagaataagatggaatcaggagtggcatcagtagcc
cagggtatggaaagcagtgttcctagcaacaaagagccaggggtgtatagcatgccatca
gccaccaacaatccagatgcctctggtcagtccttcagcgaagcgctgaagagctcgagg
aagcctccgttgcagtatgatgcctcagaatctgcagacggtggcccaggtggtaagggc
gcaaagaagaaggccaagaaaggaaagcagattgacccttctcttcttggcttcaaggtc
cacagtaaccggatcatgatgggcgagattgttcgagatgattag
DBGET
integrated database retrieval system
