Sorghum bicolor (sorghum): 8080293
Help
Entry
8080293 CDS
T01086
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00040
Pentose and glucuronate interconversions
sbi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8080293
Enzymes [BR:
sbi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
8080293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
8080293
NCBI-ProteinID:
XP_021317966
LinkDB
All DBs
Position
6:2075708..2082517
Genome browser
AA seq
484 aa
AA seq
DB search
MAAETGSSAARTRTAGLAAAAAVTALLVLVVVVGSAALPGGRVTVLDGLRHRSTAVVAGG
ARRWLRDSSSWPAAAAATTTTRGSRADGDADGSASSTPVVAGAVEDPEAVANDVHVSIRN
STARRNLGYLSCGTGNPIDDCWRCDSDWHNNRQRLADCGIGFGRNAIGGRDGKIYVVTDP
SDDDPVNPRKGTLRYAVIQEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGA
CITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAVSIFGSSHVWVDHCS
LSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYVKDKAMQVTIAFNHFGEGLI
QRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLAPTNPFAKEVTKRVETAQ
TVWKSWNWRSEGDLLLNGAYFTPSGAGASASYSRASSLGAKSSSMVGTITSDAGALSCHK
GTAC
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagagacgggctcttccgcggcgaggaccaggacggcggggctcgccgcggcg
gcggcggtgacggcgctcctcgtcctcgtcgtggtcgttggcagcgcggcgctccctggc
gggcgggtgacggtcctcgacggcctccggcacaggagcacggccgtggtggcaggcggc
gcgaggcggtggctgagggactcctcctcctggccggctgcggcggcggcgacgacgacg
acgaggggcagcagggccgacggtgacgccgacgggtcagccagcagcacgcccgtcgtc
gccggcgcggtggaggatccggaagccgtggccaacgacgtgcacgtgtccatcaggaac
agcacggcccggcgaaatctcgggtacctgtcgtgcgggacaggcaaccccatcgatgac
tgctggcgttgcgactcggactggcacaacaaccgccagcgcctagctgactgtggcatc
ggcttcggccgcaacgccatcggtggccgcgacggcaagatctacgtggtcaccgacccg
agcgatgacgatcctgtcaacccgcgcaagggcaccctccgctacgccgtcatccaggaa
gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc
atgaacagcttcaagaccatcgacggccgcggcgccaacgtgcacatcgccaatggtgcc
tgcatcaccatccagtacatcaccaacgtcatcatccacggtctccacatccacgactgc
aagcccacggggaacgccatggtgcgcagctcgcccagccactatgggtggcgcaccatg
gccgacggagatgctgtgtccatcttcggctccagccacgtctgggtggaccactgctca
ctctccaactgcgccgacggcctgatcgatgccatcatgggatccacggccattactgtg
tccaacaactacttcacccaccacaacgaggtgatgcttcttggccacagtgactcctat
gtgaaggacaaggcaatgcaggtgacaatagccttcaaccattttggtgaaggtctcatt
cagcgaatgccaaggtgccggcatggctacttccatgttgtgaacaatgactacacccac
tgggaaatgtacgccattggcgggagcgctgagcctaccatcaacagccagggcaaccgc
taccttgctccaacaaacccattcgccaaggaggtgaccaagagggtcgaaactgctcag
actgtctggaagagctggaactggagatcagagggcgacctgctgctgaatggcgcctac
ttcaccccatccggcgcaggcgcctcagccagctactcgcgcgcgtccagccttggcgcc
aagtcatcatctatggttggcaccatcacctcggatgctggtgccctgtcgtgccacaag
ggcacggcctgctag
DBGET
integrated database retrieval system
