Sorghum bicolor (sorghum): 8080328
Help
Entry
8080328 CDS
T01086
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03013
Nucleocytoplasmic transport
sbi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
8080328
03015 mRNA surveillance pathway
8080328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8080328
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
8080328
mRNA cycle factors
P-body specific factors
8080328
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
F07F6_N
Motif
Other DBs
NCBI-GeneID:
8080328
NCBI-ProteinID:
XP_021318864
LinkDB
All DBs
Position
6:complement(45728319..45737045)
Genome browser
AA seq
504 aa
AA seq
DB search
MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWACFRPGNASQKNHRYSRLYLNF
KRPEDVVEFAEVFNGHVFVNEKGAQFKAFVEYSPSQQVPKSNIKKDGREGTIMKDPEYLE
FLELISKPTEHLPSAEIQLERKEAERAAAGKEAPVVTPLMMYVRQQRAAKSMAQRPGSRL
SRKVAGVVTSSSSPKRSSEKRRSSTQYVVRDSTKEKPTYIMVPKREEHTHREKAIAGNSD
ATSGGTSGSGQAGEAKRDKIVILKGRGRVDSNTPDGATQQSSTPVKSVPPATSRLDQRPE
ASGRIIKTILSNKEIRSSNPSQHEQEGHVFNTEKDKRPPRAVNPRTIVKDQLVENSERSH
FDEKTNHLHGSAPIGEKVERHARNRDRPDRGVWAPRRYDKSTSGGGSHASSSDFPQIQSH
SGDNVSQIADGHGDRKTDTRGHGGSRGVPVENGHRHANRRGPPRGPKETEISASVPDGKN
SKRGSASYGAHERQVWVQKSSSGS
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccggcgcaccgcacgaaggtggtgctccggcggctgccgccggcgatcgcg
cagcaggccgtcgtggaccaggtcgacgcgcgcttcgctgggcggtacgactgggcgtgc
ttccgccccggcaatgccagccaaaagaatcataggtattctcgactttacctcaatttc
aagcgcccagaggatgttgttgagtttgctgaggtcttcaatgggcacgtatttgtgaat
gaaaagggtgctcaatttaaagcttttgtggaatattcaccatcacaacaggttcccaaa
tcaaatatcaagaaggatggccgtgaaggaactattatgaaagatccggagtacttggag
tttcttgagcttatttcaaagcctactgagcatctgcctagtgctgaaattcagctcgaa
aggaaagaagctgaaagggcagctgctggaaaggaggcacctgttgtgacacctcttatg
atgtatgtccgccagcaaagggcagctaagagtatggctcagagacctggaagtagactt
agcagaaaagttgcaggtgtcgtaactagcagttccagtcctaaaaggtcttctgagaag
cgcagatcctccacgcagtatgttgtacgagacagtactaaggaaaagccaacctatatc
atggtgccaaagagagaggagcatacacacagggaaaaagccattgctggaaattcagat
gccacaagtgggggaacatctggatctggtcaggctggtgaggctaaaagggacaaaatt
gtcattttgaaaggaagaggaagggttgattctaatacacctgatggagcaactcagcag
tcatcaacccctgtgaagagtgtaccgccggcgacttctagactagaccagcgacctgaa
gccagtggaagaattattaaaactatactttcaaacaaggaaatccgcagttcaaatcca
tctcaacatgagcaggaaggtcatgtgtttaatactgagaaggataagcggccaccacgg
gctgtcaaccctcgtaccattgtgaaagatcagttagttgaaaattctgagagaagccat
tttgatgagaagactaatcatcttcatggctctgctccaattggtgagaaggttgaaagg
catgccagaaacagagatagacctgatcgtggtgtatgggcgcctcgccgctatgacaaa
tctacatctgggggtggttcacatgcctcatcgtcagatttccctcaaatacagtcacat
tctggagataatgtttcgcaaatagcagatggtcatggagacagaaagacagacacaagg
ggtcatggtggtagccgtggtgttcctgttgaaaatggacataggcatgccaaccgtcgt
ggtcctccacgtggtccaaaggaaactgaaatatctgctagcgtgcctgatggaaagaat
tcaaagaggggctctgctagttatggtgctcatgagagacaagtatgggttcagaagtca
agttcaggctcgtga
DBGET
integrated database retrieval system
