KEGG   Sorghum bicolor (sorghum): 8080362
Entry
8080362           CDS       T01086                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    8080362
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbi03019]
    8080362
Messenger RNA biogenesis [BR:sbi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     8080362
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     8080362
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 8080362
NCBI-ProteinID: XP_002446548
UniProt: C5Y987
LinkDB
Position
6:46487692..46492837
AA seq 128 aa
MSWSAPDDILLSTSLAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGEQ
YCDVPLGLYVIRGENVVLIGELDREKDELPAHMTCVSEAEIRKAEKAEREARDLKGTMRK
RMEFLDFD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttggtccgcgcccgacgacatcctcctctccacctccctcgccggcttcttggac
aagaaacttattgtcctgctaagagatggacggaaacttcttggcaccctctgctcattt
gatcagtttgcaaatgttgttcttcagggtgcttgtgaacgagtgattgtaggggaacaa
tattgtgatgttcctcttggtctgtatgttatccgaggagagaatgttgttttaatcgga
gaattggatcgcgaaaaggatgaactccctgctcacatgacatgtgtttcagaagcagaa
ataagaaaggctgaaaaggcagagcgagaagcaagggatctgaaaggcacgatgaggaaa
cggatggagttcctagacttcgattaa

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