Sorghum bicolor (sorghum): 8080362
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Entry
8080362 CDS
T01086
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8080362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8080362
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8080362
mRNA degradation factors
5'-3' decay
Lsm complex
8080362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
8080362
NCBI-ProteinID:
XP_002446548
UniProt:
C5Y987
LinkDB
All DBs
Position
6:46487692..46492837
Genome browser
AA seq
128 aa
AA seq
DB search
MSWSAPDDILLSTSLAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGEQ
YCDVPLGLYVIRGENVVLIGELDREKDELPAHMTCVSEAEIRKAEKAEREARDLKGTMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttggtccgcgcccgacgacatcctcctctccacctccctcgccggcttcttggac
aagaaacttattgtcctgctaagagatggacggaaacttcttggcaccctctgctcattt
gatcagtttgcaaatgttgttcttcagggtgcttgtgaacgagtgattgtaggggaacaa
tattgtgatgttcctcttggtctgtatgttatccgaggagagaatgttgttttaatcgga
gaattggatcgcgaaaaggatgaactccctgctcacatgacatgtgtttcagaagcagaa
ataagaaaggctgaaaaggcagagcgagaagcaagggatctgaaaggcacgatgaggaaa
cggatggagttcctagacttcgattaa
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