Sorghum bicolor (sorghum): 8080867
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Entry
8080867 CDS
T01086
Name
(RefSeq) RNA polymerase sigma factor sigA
KO
K03086
RNA polymerase primary sigma factor
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8080867
Transcription machinery [BR:
sbi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
8080867
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
HTH_AsnC-type
HTH_24
HTH_28
Motif
Other DBs
NCBI-GeneID:
8080867
NCBI-ProteinID:
XP_002443917
UniProt:
C5YHG2
LinkDB
All DBs
Position
7:5435076..5438684
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AA seq
500 aa
AA seq
DB search
MTATPAMIGLSAGKRLLATSFGNTDLAPPDAHPSLQFAPAAPKLTVVAHRASASSSSSSS
SPAGHARAHAIRALRNHSAPALAPPLPLPLPPPPAADPAPELDSEFEFELESSLEAIVLL
QRSMLEKQWQLPFEDEDEDDERLTKAAVVVARSGVSARQRRMSGRRRGPGRKSVTVSPEL
MQSRNRIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSL
HISPPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEK
FDASRGFRISTYVYWWIRQGVSRALADNSKAFRLPTYLHERLIAIRGAKYALEDQGIAPT
VENIAESLNISEKKVHNATEAVNKVLSLDQQAFPSLNGLPGDTLHSYIEDQNVANDPWHG
FEERYLKEEVNNLINSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLVA
MEKLKHAARRKHLDALLEEY
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgacgccggcgatgatcgggctgagcgccggcaaacgcctcctcgccacctca
ttcggcaacaccgacctcgcgcccccggacgcgcacccgtcgctgcagttcgcgcccgcc
gcgcccaagctcaccgtcgtcgcgcaccgcgcctccgcctcctcgtcgtcctcatcctcg
tcccccgccggccacgcgcgcgcgcacgccatccgggcgctcaggaaccactccgcgccc
gcgctcgccccgcctctgccgctgccgctgccgcctccacccgcggcggacccggctccg
gagctggactcggagttcgagttcgagctggagtcctcgctcgaggccatcgtgctgctg
cagcgctccatgctcgagaagcagtggcagctccccttcgaggacgaggacgaggacgac
gagaggcttaccaaggccgccgtggtggtggcgcggtccggcgtctcggcgcggcagcgg
cggatgagcggccgccggcggggacctggtcggaagagcgtcaccgtcagcccggagctg
atgcagagccggaaccgcatctacctacggggcaccgtcagtaaagacctcctcacgcac
aagcaggtcattcagctctccaggaagatcaaggacggcatctggcttcagcaccaaaga
tcaaagctcaaggagaaactggggaatgagccgtcatacaagcagctggcgcaatcactg
catatatcgccccctgaactgcgtgcaagaatgcgtgagtcatttcttgcgagggagatg
ctgacaatgagcaacatccgtctggtgatatccattgctcagaagtatgataacctaggt
gtggagttggcagaccttattcagggtggtctgataggtctactccgtgggatcgaaaag
tttgatgcctcaaggggatttaggatttccacctatgtgtattggtggattcgtcagggc
gtttcaagagcattggctgataactcaaaggcgttcaggctccctacttatttgcatgag
aggttgattgcaattcgtggtgcaaagtatgcgttggaagatcaaggaattgctccgaca
gtagagaacatagcagagtcgctcaatatatcggaaaagaaagtgcacaatgctacagag
gctgtgaacaaggttctttcactggatcaacaggcgttcccctccttaaatggcctacct
ggggacacactccatagttatatagaggatcagaacgtcgcaaatgatccatggcatgga
tttgaggaaaggtatctcaaggaggaagttaataatcttataaattcaactctcaacgag
cgtgagagggatattattcgattgtatcatggcataggaaaacagtgccatacatgggag
gacatcagcagacaatttgggttgtcgagggagcgtgtgaggcaagtaggactcgttgca
atggagaagctgaagcatgctgcaaggaggaaacatttggatgcattgcttgaggaatat
tga
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