Sorghum bicolor (sorghum): 8081072
Help
Entry
8081072 CDS
T01086
Name
(RefSeq) phytochrome B
KO
K12121
phytochrome B
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
8081072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HisKA
HATPase_c
PAS_4
PAS_9
PAS_3
PAS_8
Motif
Other DBs
NCBI-GeneID:
8081072
NCBI-ProteinID:
XP_002467973
UniProt:
P93527
A0A921S522
Structure
PDB
PDBj
LinkDB
All DBs
Position
1:complement(68035215..68043712)
Genome browser
AA seq
1178 aa
AA seq
DB search
MASGSRATPTRSPSSARPEAPRHAHHHHHHHSQSSGGSTSRAGGGGGGGGGGGGTAATAT
ATATESVSKAVAQYTLDARLHAVFEQSGASGRSFDYSQSLRAPPTPSSEQQIAAYLSRIQ
RGGHIQPFGCTLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSAAPPPVSLGADARL
LFSPSSAVLLERAFAAREISLLNPLWIHSRVSSKPFYAILHRIDVGVVIDLEPARTEDPA
LSIAGAVQSQKLAVRAISRLQALPGGDIKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGE
VVAESRRDNLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHATPVRVIQDPGMSQPLC
LVGSTLRAPHGCHAQYMANMGSIASLVMAVIISSGGDDEQTGRGGISSAMKLWGLVVCHH
TSPRCIPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIV
TQSPSIMDLVKCDGAALYYHGKYYPLGVTPTESQIKDIIEWLTVCHGDSTGLSTDSLADA
GYLGAAALGDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSS
FKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAAEGTSNSKAIVNGQVQLGELELR
GINELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLI
FKESEEIVEKLLSRALRGEEDKNVEIKLKTFGSEQSNGAIFVIVNACSSRDYTQNIVGVC
FVGQDVTGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTSCSEWNTAMEKLTGWS
RGEVVGKFLIGEVFGSFCRLKGPDALTKFMVVIHNAIGGQDYEKFPFSFFDKNGKYVQAL
LTANTRSKMDGKSIGAFCFLQIASAEIQQAFEIQRQQEKKCYARMKELAYICQEIKNPLS
GIRFTNSLLQMTDLNDDQRQFLETCSACEKQMSKIVKDATLQSIEDGSLVLEKSEFSFGD
VMNAVVSQAMLLLRERDLQLIRDIPDEIKDASAYGDQFRIQQVLADFLLSMVRSAPSENG
WVEIQVRPNVKQNSDGTDTELFIFRFACPGEGLPADIVQDMFSNSQWSTQEGVGLSTCRK
ILKLMGGEVQYIRESERSFFLIVLELPQPRPAADREIS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgggcagccgcgccacgcccacgcgctccccctcctccgcgcgacccgaggcg
ccgcgtcacgcgcaccaccaccaccaccaccactcgcagtcgtcgggcgggagcacgtcc
cgcgcgggcgggggaggtggaggaggaggaggtggcgggggcaccgcggccacggctacg
gccacggccacggagtcggtctccaaggccgtggcgcagtacaccctagacgcgcggctc
cacgcggtgttcgagcaatcgggcgcgtcgggccgcagcttcgactactcccagtcgctg
cgcgcgccgcccacgccgtcctccgagcagcagatcgccgcctacctctcccgcatccag
cgcggcggccacatccagcccttcggctgcacgctcgccgtcgccgacgactcctccttc
cgcctcctcgccttctccgagaacgccgccgacctgctcgacctgtcgccgcaccactcc
gttccctcgctcgattccgcggcgccgccccccgtttccctgggtgccgacgcgcgcctc
ctcttctccccctcgtccgcggtcctcctggagcgcgccttcgccgcgcgcgagatctcg
ctgctcaacccgctatggatccactccagggtctcttccaagccgttctacgccatcctc
caccgcatcgacgtcggcgtcgtcatcgacctcgagcccgcccgcaccgaggaccccgct
ctctccatcgccggcgcagtccagtcccagaaactcgcggtccgtgccatctcccgcctc
caggcgctacctggcggggacatcaagctcctctgcgacacagtcgtggagcatgttcgc
gagctcacgggttacgaccgtgtcatggtgtacaggttccatgaagacgagcatggggaa
gttgtcgccgagagccggcgcgataaccttgagccttacctcggattgcattatcccgcc
acagatatcccccaggcatcgcgcttcctgttccggcagaaccgcgtgcggatgattgct
gattgccatgccaccccggtgagagtcatacaagatcctgggatgtcgcagccactgtgt
ttggtaggctccacgcttcgtgctccacacgggtgccatgcgcagtacatggcgaacatg
gggtcaattgcatcacttgttatggcagtcatcattagcagtggtggtgatgacgagcaa
acaggtcggggaggcatctcctcggcaatgaagttgtgggggttagtggtgtgtcaccat
acgtcaccacggtgtatcccttttccattgaggtatgcttgcgagtttctcatgcaggca
tttgggctgcagctcaacatggaattgcagcttgcgcatcagctgtcagagaagcacatt
ttgcgaactcagacgctattgtgtgacatgctattgcgagattcaccaactggcatcgtc
acgcagagccccagcatcatggaccttgtgaagtgtgatggggctgcactgtattatcat
gggaagtactatccattgggtgtcactcccactgagtctcagattaaggatatcattgag
tggttgacggtgtgtcatggggactcaacagggctcagcacagacagccttgctgatgca
ggctaccttggtgctgctgcattaggggatgctgtgtgtggaatggcggtggcttatatt
acaccgagtgattacttgttttggtttcggtcacacacagctaaagagatcaaatggggt
ggcgcaaagcatcaccctgaggataaggatgatggtcagaggatgcacccacggtcatca
ttcaaggcatttcttgaagtggttaaaagcagaagcctaccatgggagaatgcagaaatg
gacgcgatacattccttgcaactcatattgcgtgactccttcagagatgctgcagagggc
actagcaactcaaaagccattgtcaatggacaagttcagcttggggagctagaattgcgg
gggataaatgagcttagctctgtagcaagagagatggttcggttgatagagacagcaaca
gtacccatatttgcagtagatactgatggatgtataaatggttggaatgcgaaaattgct
gagttgacaggcctttcagttgaggaggcaatgggcaaatctctggtaaacgatcttatc
ttcaaggaatctgaggagatagtcgaaaagctactctcacgagctttaagaggtgaggaa
gacaaaaatgtggagataaagttgaagacatttgggtcagagcaatctaacggagcaata
tttgttattgtcaatgcttgttccagtagagattacacacaaaatattgttggtgtctgt
tttgttggacaagatgtcacaggacaaaaggtggtcatggataaatttatcaacatacaa
ggggactataaagctattgtacacaatcctaatcctctgatacccccaatttttgcatca
gatgagaacacttcttgttcagaatggaacacagccatggaaaaacttacaggatggtcg
agaggtgaagttgttggtaaatttcttattggagaggtgtttggaagtttttgtcgactc
aagggcccagatgcattgacaaagttcatggttgtcattcacaatgctataggagggcag
gattatgagaagttccctttttcatttttcgacaagaatggaaagtatgtgcaggcctta
ttgaccgccaacacaaggagcaaaatggatggtaaatccattggcgccttttgttttttg
cagattgcaagcgctgaaatacagcaagcctttgagattcagagacaacaagaaaagaag
tgttatgcaaggatgaaagaattggcctatatttgccaggagataaagaatcctcttagt
ggcatccgatttaccaactctctgttgcaaatgactgatttaaatgatgatcagaggcag
ttccttgaaacttgctctgcttgtgagaaacagatgtccaagattgttaaggacgccact
ctccaaagtattgaggacggctctttggtacttgagaaaagtgagttttcttttggagac
gttatgaatgctgttgtcagccaagcaatgttattgttgagggagagggatttacaactt
attcgggatatccctgatgaaatcaaggatgcatcagcatatggtgatcaatttagaatt
caacaagttttggctgacttcttgctaagcatggtgcgatctgctccgtccgagaatggc
tgggtagaaatacaagtcagaccaaatgtaaaacagaattctgacggaacagatacagag
cttttcatcttcaggtttgcctgccctggtgagggccttcccgctgacattgtccaggat
atgttcagcaattcccagtggtcaacccaagaaggcgtaggactaagcacatgcaggaag
atcctcaaattgatgggcggtgaggtccaatacatcagggagtcagagcggagtttcttc
ctcatcgtcctcgagctgccccagcctcgtccagcagctgatagagaaatcagttga
DBGET
integrated database retrieval system
