Sorghum bicolor (sorghum): 8081075
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Entry
8081075 CDS
T01086
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8081075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbi03041
]
8081075
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
8081075
Spliceosome [BR:
sbi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
8081075
Complex B
8081075
Complex C
U2 SnRNP specific factors
8081075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
8081075
NCBI-ProteinID:
XP_002467976
UniProt:
C5WMG3
A0A921S4V3
LinkDB
All DBs
Position
1:complement(68098417..68103213)
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AA seq
766 aa
AA seq
DB search
MSKRPKLEGFSIPRPTSYNFERSQPVQRLYRPTDDPDLDDIAFSDDAPSDAPASTAVEGK
AEDDEEIDPLDAFMAEIQEEIRAPPPPPKPEALRRADSDDDEDDPVESFLRAKKDAGLTL
AADAMRAGYDSDEEVYAAAKAVDAGMMEYDSDDNPIVVDKKKIEPIPALDHSTIEYDAFT
KDFYEEKPSISGMSDQEVADYMKSLAIRVSGFDVPRPIKNFQDCGFPVPLMNAIAKQAYE
KPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVICAP
TRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCEVVIATPGRLIDLLKMK
ALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPYKVERLAREILT
DPIRVTVGQVGGANEDIKQVVNVLPSDVEKMPWLLEKLPGMIDDGDVLVFASKKARVDEI
EKELNQRGFRIAALHGDKDQASRMETLQKFKSGTYHVLVATDVAARGLDIKSIKTVVNFD
IAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEARFAGELVHSLIAAGQDVPNELMDLAM
KDGRFRAKRDSRKGGKKGGKGKGGGGGAGRGRGVRGVDFGLGIGYNAESGSQVPPPRSAA
VNSLKTGMMQQFKSSFVSGSSNTPSSSAPSFVRPALRGFVSGGTIGGDARPAQSAPTFVP
ASRPAQPAPSVPAPRPAGNINENGNSNPESSRDRSRERKRPSGWDR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgcccgaagctcgagggtttcagcatcccgcggcccacctcctacaacttc
gagcgctcgcagcccgtgcagcggctctaccgtccgacggatgacccggacctcgacgac
atcgccttctccgacgacgccccctcagatgcccccgccagcaccgcggtggaaggaaag
gcggaggatgacgaggagatcgacccgctcgacgccttcatggccgagatccaggaggag
atccgcgcgcctcccccgccgcccaagcccgaggcgcttcgccgcgcggactccgacgat
gacgaggatgaccccgtcgagagcttcctgcgggccaagaaggacgccgggctcacgctg
gccgccgacgccatgcgcgctggttacgactccgatgaggaggtctatgctgctgccaag
gccgtcgacgccggcatgatggaatacgattccgatgacaaccccatagtcgtcgacaag
aagaaaatagagcccataccagcactcgatcactcgaccattgagtatgacgctttcacc
aaagatttctacgaggagaagccgtcgatttcaggtatgagtgaccaagaggtagcagat
tatatgaaaagtttggcaattcgggtttctggtttcgatgtgccaaggccaataaaaaac
ttccaggattgtgggtttcctgtaccgctaatgaatgctattgccaagcaagcttatgaa
aaaccaactacaattcagtgccaggctttacctatcgtactttcaggcagagatatcatt
ggtattgcaaaaactggttctggcaaaactgcagcttttgtgctccctatgattgttcat
attatggatcagcctgagcttgagaaagaagaaggtcctataggagtaatttgtgctcca
acaagagaattggcacatcagatatatctcgaagctaagaagtttgcaaagccttacaat
cttcgagttgctgctgtatatggtggtgtttccaaatttgaccagtttaaagaactgaaa
gcaggttgtgaagtagtcattgcaactccagggagattaatagacttgctgaagatgaag
gcattgaagatgttcagggcaacttatctggttcttgatgaagctgatcgcatgttcgat
cttggatttgagccacaaatacgatctattgttggtcaaattagaccagatcgacaaacc
ttacttttttctgcaacaatgccatacaaagtagagcgtttggcaagagaaatattgact
gatcctattagagttacagttggccaagttggcggtgctaatgaagacattaaacaagtt
gttaatgtactcccttctgatgttgagaaaatgccttggcttttggagaaattgcctgga
atgattgatgatggagatgttcttgtattcgcatctaagaaggctagagtggatgagata
gagaaagagttgaatcagagaggattcagaattgcagcacttcatggtgacaaggatcaa
gcttctcgtatggagactctgcagaagttcaaatctgggacgtatcatgttctggttgca
actgatgttgctgcacgaggtcttgacatcaaatcgattaaaacagttgtcaattttgat
attgcaaaagagatggatatgcatattcaccgaattggaagaactggtcgcgctggtgat
aaagatggcactgcatacactctgattacacagaaggaagcacgctttgctggtgaactg
gttcacagtttgattgctgctggccaggatgtaccaaatgaactcatggatctggctatg
aaggatggaagattcagagcaaaacgggactccaggaaaggtgggaagaaaggtggcaaa
ggaaaaggtggtggtggaggtgctgggcgcggtcgtggtgtgcgtggagttgattttggc
ctcggcataggttacaatgctgaatctggttcgcaagtgcctcctccaagatctgctgct
gtaaattcgttgaagacagggatgatgcagcaatttaagagcagctttgtctctggatct
tcaaatacaccaagcagcagtgcgccttcctttgtaagaccagcactccgtggctttgtg
tctggcggcaccattggaggagatgcacggcctgcacagtcggcccccacttttgtccct
gcatcccggccagcgcagcctgccccctctgtccctgcaccgcggcctgcaggaaacatc
aatgaaaatgggaactcaaatccagaaagttcacgggatcggtccagggagagaaaacga
ccatcaggttgggatcgctag
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