Sorghum bicolor (sorghum): 8081203
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Entry
8081203 CDS
T01086
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00040
Pentose and glucuronate interconversions
sbi01100
Metabolic pathways
Module
sbi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8081203
Enzymes [BR:
sbi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
8081203
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
8081203
NCBI-ProteinID:
XP_002463688
UniProt:
C5WW45
A0A921RX31
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Position
1:3396563..3398165
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AA seq
391 aa
AA seq
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MAMAMAMASSSHHQSVFSLDSYGARGDGRHDDTPALEKAWEAACASPRPAVVLVPNGGRY
LLKLVTLRGPCKSSVTLTVKGTLVASPDRADWSDKDRRHWIVFRRVNKLTVNGGGTIDGN
GQKWWPHSCKINKTLPCKVAPTALSFHHCTNLRVDNLKIMNGQQMHMSVEDCTDVVLARL
SITAPARSPNTDGIHITRSKNVRVTNCKIKTGDDCMSIENGTHNLHVSKVVCGPGHGISI
GSLGDDNSRAEVSGITIDSVQLYGTTNGARIKTYQGGSGYAKDITFQNMIMYGVKNPIII
DQNYCDKATPCAEQRSAVRVSNVVFKNIRGTTITKHAIKMNCSKNVPCQGITLKNIDMKL
KGGKGNIDSTCQNAKWRKSGFVHPQPCIATK
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggcaatggcaatggcatcatcgtctcaccaccagagcgtgttcagcctcgac
agctacggcgcccgtggcgacgggaggcacgacgacacgccggcgctggagaaggcgtgg
gaggcggcgtgcgcctcgccacggccggccgtcgtgctcgtccccaacggcgggcgctac
ctgctcaagctcgtcaccctccgtggcccgtgcaagtccagcgtcacgctcacggtgaag
ggcacgctggtggcgtcgccggacagggcggactggagcgacaaggacaggaggcactgg
atcgtgttccgaagggtcaacaagctcaccgtcaatggcggtggcaccatcgacggcaat
ggccagaaatggtggccacactcgtgcaagatcaacaagactctgccttgcaaggtagct
ccaacggctttgtcattccaccactgcacgaatctgagagtggacaatctgaaaattatg
aacggccagcaaatgcacatgtcagtcgaggattgcacggatgtggtattagcacggtta
tccatcacagcgccggccaggagccctaacactgacggcatccacatcactcggagcaaa
aatgtacgggtcacaaattgcaagatcaagactggggatgactgcatgtcaatcgagaac
gggactcataaccttcatgtctccaaagtggtttgtggtccggggcacgggatcagcatc
ggaagcttaggagacgacaactcacgagctgaagtctctggcattaccatagattcggtg
caactatatggcacgacaaatggagcacgcatcaagacgtaccagggaggaagtgggtac
gccaaggacatcacgttccaaaacatgatcatgtacggtgtcaagaacccgataatcatc
gaccagaactactgcgacaaagctacgccatgcgctgaacaaagatcagcggtgcgggtt
agcaatgttgtcttcaagaacattagagggacaaccatcaccaagcatgccatcaagatg
aactgcagcaagaatgtcccatgccaaggaattaccttaaagaacattgacatgaaacta
aagggcggcaagggcaacatagatagcacatgccagaatgccaagtggagaaaatctggg
tttgttcacccacagccttgcattgccacaaagtag
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