Sorghum bicolor (sorghum): 8081372
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Entry
8081372 CDS
T01086
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8081372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8081372
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8081372
mRNA degradation factors
5'-3' decay
Decapping complex
8081372
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
8081372
NCBI-ProteinID:
XP_002457099
LinkDB
All DBs
Position
3:complement(998769..1006024)
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AA seq
843 aa
AA seq
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MLPTREPPSGSMPLSQGHFLLEPEPLPVAVPAANANTSNTGDTRFDASQYAFFGNNVLED
IELGGFEDDNDSNAAFAGLDDLERPLSSQEIALEAEDSSFSDLDDLANTFSKLRRDVNLP
KHIGVNNLGTSFSRESSAAADWAPEFDSPLWPDQYVQVAKQGPNGNGWWPPPHHSSLLAD
SRLHRTSSSPQQQEQNNHNEPVLGPRPSPLHRTSSYPQKEPQYNPAEVIPAPNAPYMSNH
PPSGPPNSVPRQPHQMNMPSFNEFQMHMSAQSDVPFSQFPRGGTPPEPLFGGNRGHMIST
SFSTNNSAQQGHLLNNGQFHGETASNMPNLLPNHLQRPNTFMPPQMPTIRQHHGLLPIQQ
SSQQSSRTQAHMFGPQHPPHMMNRFDNFGMPEFSDPRARSSMHHGRQGHHFPFQGSEFGI
MKMGNGRSRFRSKYMSTEELENILRIQHAATHINDPYIDDYYHQACLASRYVDGRSKHRF
YPTLIRDPSSCARSKDEPHAYLKVDALGRLPFSSIRRPRPLLDVEPASATDDNTLISKPL
DQEPLLAARITIEDGLSLLLDIDDIDRLLQFSQQQDGGLQLKNRRQSLLGQLAESLQLVD
PLGPNKKTHLSANDDLVFLRIVSLPKGRKLLARYINIMVPGSDLARIVCMAVFRHLRFVF
GNLPSDDGSAETVTKLASAVAACIRGMDLSGLSACLAAIVCSSEHPPLRPLGYAAGDGAT
VIIKSVLDRATDLLTEHPAAPDYSAPNRALWQASFNAFFGLLTKYCVSKFDSMVHTMHKH
PAAATVIHKELPVELLRASLPHTDEQQRRLLLEFAQRTLPVAGHSSDGTGQLGGNMASET
IPS
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgctgccaacgagggaacctccttctggatccatgcccttgagccagggccactttctc
ctggagccggagccgctgccggttgcggtacctgctgccaacgcgaacacctctaataca
ggtgacactagatttgatgcatcacagtatgctttttttggcaacaatgtgctggaggac
attgaactaggtggattcgaagatgataacgacagtaatgctgctttcgctggactcgat
gatttagagcgcccactttcttctcaagagattgcactagaggctgaagatagttcattc
tcagatcttgatgatcttgcaaatacattctcaaagctaagaagagatgttaacctacca
aagcatattggggtaaataaccttgggacttctttttcaagagaaagttctgctgctgct
gactgggctccagaatttgattccccactctggcctgatcagtacgtgcaagttgctaag
caaggaccaaatggcaatggctggtggcctccaccgcatcattcttctctccttgctgat
tccagattgcacagaacatcctcatcccctcagcaacaggaacaaaacaatcataatgaa
cctgttcttggacccaggccatctcctttgcaccggacatcctcatacccacaaaaggag
cctcagtacaatcctgctgaagtcattcctgcaccaaatgcaccatacatgtcaaaccat
ccacctagtggtccacccaattcagtgcctcgacagccacatcagatgaacatgccatct
ttcaatgaatttcagatgcatatgtctgcacaaagtgatgtcccattctcccagtttcct
cgtggagggacacctccagagccattgtttggtggaaaccggggccatatgatttcaaca
agcttctcaactaacaacagtgcgcaacaaggtcatctgctgaataatgggcagtttcat
ggggaaactgccagcaacatgccaaatttgctgccaaaccatctacaacgtccgaataca
ttcatgccccctcaaatgccgacaatacgccaacaccatggcttgctcccaattcagcaa
tcttcacagcagtcatcaagaacacaggcacacatgtttggtccccagcatccaccacat
atgatgaataggtttgataattttgggatgcctgagttcagtgatccaagagcaagatca
tcaatgcaccatggaaggcaaggtcaccattttccattccaaggctctgagtttggtatt
atgaagatgggtaatgggaggtcaagatttagatccaagtatatgtccactgaagaactt
gaaaacattttaagaatacagcatgccgccactcacataaatgatccatacatcgatgat
tattaccatcaagcttgtctggccagcagatatgtggatggaaggtcgaagcaccgcttc
tacccaaccttgattcgggatccatcatcatgtgcgcggagtaaagatgagccacatgca
taccttaaggtcgatgcccttgggagactgccattttcttccatccggaggccacgccca
cttcttgatgttgaaccagcttctgcaactgacgataacactcttatttcaaagcctctt
gatcaggagcctctgctagctgctaggatcacaattgaggatggactctccctactactt
gatatagatgatattgatcgcttgcttcaatttagccagcagcaagatggtggtttacaa
cttaaaaacagaaggcaatctctccttggtcagctggcagaatcactgcagttggttgat
ccactaggtccaaataaaaaaacacatttgtctgcaaatgatgatttggtatttcttcgc
attgtttctctacccaagggccggaaactacttgcacgctatatcaacatcatggtacct
ggtagcgatcttgcaaggatagtttgcatggcagtatttcggcatctgaggtttgtgttt
ggaaatttgccctccgatgatggttcagctgagacagtaactaaactagctagtgctgta
gctgcatgcattcgtgggatggacttaagtggcctcagtgcttgtcttgcagcaattgtt
tgctcgtctgagcatccacctcttcgaccccttggatatgctgctggtgatggtgccact
gtcatcataaagtctgtcctggatagagcaacagaccttctcactgagcatcctgctgca
ccagactatagcgctccaaaccgagccctgtggcaagcatcgtttaatgctttctttggg
ctgcttacaaagtattgcgtgagtaaatttgacagcatggttcatactatgcacaagcac
cctgctgctgcaacagttatacacaaggaacttccagttgagcttctgcgtgccagtctt
cctcacacagatgagcaacagcgcagactattgcttgagttcgcccagcggactttgcct
gtcgctggccatagttctgacgggacagggcagctgggtggaaacatggcatctgaaaca
ataccaagttaa
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