KEGG   Sorghum bicolor (sorghum): 8081406
Entry
8081406           CDS       T01086                                 
Name
(RefSeq) protein transport protein SEC13 homolog B
  KO
K14004  protein transport protein SEC13
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03013  Nucleocytoplasmic transport
sbi04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    8081406
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    8081406
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbi03019]
    8081406
   04131 Membrane trafficking [BR:sbi04131]
    8081406
Messenger RNA biogenesis [BR:sbi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     8081406
Membrane trafficking [BR:sbi04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    8081406
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    8081406
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    8081406
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_Vps41 ANAPC4_WD40 WDR55 Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd WD40_Gbeta Beta-prop_IFT122_1st Beta-prop_IFT140_1st EIF3I NBCH_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_HPS5 WD40_RFWD3 PROPPIN WD40_2 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 8081406
NCBI-ProteinID: XP_002454939
UniProt: C5XL07 A0A921RA24
LinkDB
Position
3:complement(1812078..1814828)
AA seq 305 aa
MPPHKIETGHQDVVHDIAMDYYGKRLATASSDNTIKIIGVSGNSHQQLATLSGHQGPVWQ
VAWAHPKFGSMLASCSYDGRVIIWKEGSKPDEWALVHTFAEHKSSVNSIAWAPHELGLCL
ACGSSDGNISVFTARSDGGWDTTRIDQAHPVGVTSVSWAPAMAPGALISAGSSGQFEYVQ
KLASGGCDNTVKVWKLNNGSWRMDCFPALQMHKDWVRDVAWAPNLGLPKSTIASASQDGT
VVIWTAAKEGEQWEGQVLYDFRTPVWRLSWSLTGNILAVSDGNNNVTLWKEAVDGEWQQV
TTVEP
NT seq 918 nt   +upstreamnt  +downstreamnt
atgccaccccataagattgaaactgggcatcaagatgtggtgcatgatatcgccatggat
tactatgggaagcgcctagctacagcctcctctgataacacaataaagatcattggcgta
agtggaaactcacaccagcagcttgcaactttgagtggacaccagggcccagtatggcaa
gtcgcatgggctcatcccaagtttggttccatgctcgcatcctgcagctacgacggccgg
gtgatcatctggaaggaaggaagcaagcctgatgaatgggcactggtacacacctttgct
gagcacaagtcctccgtgaattccatcgcatgggcgcctcatgagctgggtctatgcttg
gcttgtggttcatcagatgggaacatttcagtcttcactgctcgttctgatggaggctgg
gacaccacacgtattgatcaggcgcatccagtcggtgtgacctcagtttcttgggcccca
gcaatggcaccgggagctctaatcagtgcaggatcttctggtcagtttgagtatgttcag
aaactcgcttctggtggctgcgacaacacggtgaaggtgtggaagctcaacaatgggagt
tggcggatggactgtttccctgccttacagatgcacaaggactgggtgagagatgttgcg
tgggcgccaaacctgggccttccaaagtccaccattgccagcgcctctcaggatggaaca
gttgttatctggacagcagcaaaagaaggcgagcagtgggaaggccaggtgctgtatgat
ttcaggacccctgtgtggaggctgtcatggtcactgactgggaacatattggcggtgtct
gatggcaacaacaatgtgaccctgtggaaggaagctgtcgatggcgaatggcagcaagtg
acgactgttgagccataa

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