Sorghum bicolor (sorghum): 8081933
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Entry
8081933 CDS
T01086
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03030
DNA replication
sbi03420
Nucleotide excision repair
sbi03430
Mismatch repair
sbi03440
Homologous recombination
sbi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
8081933
03420 Nucleotide excision repair
8081933
03430 Mismatch repair
8081933
03440 Homologous recombination
8081933
03460 Fanconi anemia pathway
8081933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sbi03000
]
8081933
03032 DNA replication proteins [BR:
sbi03032
]
8081933
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8081933
Transcription factors [BR:
sbi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
8081933
DNA replication proteins [BR:
sbi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
8081933
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
8081933
MMR (mismatch excision repair)
8081933
DSBR (double strand breaks repair)
HR (homologous recombination)
8081933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
CDC24_OB3
DUF223
RMI1_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
8081933
NCBI-ProteinID:
XP_002454649
UniProt:
A0A921UL43
C5XTK3
LinkDB
All DBs
Position
4:complement(65255393..65259138)
Genome browser
AA seq
652 aa
AA seq
DB search
MAGAKLTPNAVAAAMAGDTNLKPVVQVVDLRSIAVTGGSGPRFRAIISDGVATGHALFAS
QLCDLARSGVVRRGSVVQLLDYIVNDVGPHRNRKAIVILNLEVLAAECEIIGNPALPPDS
GDSNSMRADQFNGALQNGSIAGTALNKVARPSDNAQVIQRSMAGNSLNMVPRPSENAQVF
QPTVQPSYRPAPNYRNHGTIMKNDAPARIIPISALNPYQGRWAIKGRVTAKGEIRRYHNA
KGDGKVFSFDLLDSDGGEIRATCFNTLVDRFYEVVEVGKVYVVSRGNLKPAKKDYNHLNN
EWEIFLEFQSTIELCLDENSSIPAQRFSFSSIDKIEDSENNAIVDVIGVVTSVNPSTTIQ
RKNGMEAQKRTITLKDTSGRSVELTMWGDFCNREGLQLQEMVEYGVFPVLAVKAGKVNDY
SGKSVGTISSSQLLINPDLAEAHSLRQWFDCGGRDASTQSISRDFTPSASRNEIRKTIAQ
IKDDGLGMGDKPDWVTVKATVTFIKTDPFCYTACPNVVGDRQCGKKVTKSDSGNWLCDKC
NQEFPECDYRYLLQLNIQDHTGTTSATAFQEVGQELLGCSARELNMFKENEDPRYTAVLI
HCLYQNYLLRLKVKEEQYGDERRVKNTVVKVERVDPSAESKFLLDSISRFIV
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggcgaagctgacccccaacgccgtggcggcggcgatggcgggggacaccaac
ctcaagccggtggtgcaggtcgtcgacctccggagcatcgcggtcaccgggggctccggg
cccaggttccgcgccatcatctccgatggcgtcgccacggggcacgcgctcttcgcctcg
cagctctgcgacctcgcgcgctccggcgtcgtccgccgcggctccgtcgtgcagctcctc
gactacatcgtcaacgacgtcggcccccaccggaacagaaaggctattgttattctcaac
ttggaggttcttgctgcagagtgtgagattattggaaatccagcactacctcctgattct
ggagattctaattccatgagagcagaccagtttaatggagcacttcaaaatggttcaata
gcagggactgctttgaacaaagtggcaaggccctctgacaatgctcaagtaatccagaga
tcaatggcagggaactctttgaacatggtccctaggccaagtgaaaatgcacaggtcttc
caaccaacagttcagccatcctatcgccctgcacccaattacagaaaccatggcacaatc
atgaaaaacgatgctcctgctagaataatccccatatctgctctaaatccttatcagggc
cgctgggctatcaagggtcgagtaactgccaaaggagagatccgccggtaccataatgca
aaaggtgatggcaaagtgttctcttttgacctgcttgattctgatggtggtgagattcgg
gccacatgtttcaatactcttgttgatcgcttctatgaagttgtggaagttggtaaggtc
tatgtggtatctagaggaaacttgaaacccgcaaagaaggactacaaccatctgaataat
gagtgggagattttcttggaatttcagtcaactattgaactttgtcttgatgagaacagt
tctattcctgcccagcggtttagcttctcatctattgataaaattgaagactcagagaac
aatgctattgttgatgtcattggtgttgttacatctgtcaaccctagtactacaatacag
aggaaaaatggtatggaagctcagaaaaggaccatcaccctgaaggatacgtcgggtcgt
agtgttgagcttaccatgtggggtgacttctgcaacagagaaggcttacagctgcaagaa
atggttgaatacggggtgtttcctgtactggctgtcaaagctggaaaagtcaatgattac
agtgggaagtctgttggcacaatttcttcatctcaactcctcataaaccctgatcttgct
gaggctcattctctcaggcagtggtttgattgtggaggaagagatgcttctactcagtcc
atatccagggattttactccttcagcatcaaggaatgagatccgaaagacaatagcacag
ataaaggatgatggtcttggaatgggggacaaacctgattgggtcacggtgaaggctact
gttacattcatcaaaaccgaccccttctgctacacagcttgccccaatgtggttggtgac
aggcaatgtggtaaaaaggtgacaaagtctgattcaggcaactggctatgtgacaagtgc
aatcaagagtttccagagtgtgattacaggtatctcctgcagttgaacattcaagatcac
acgggaacaacttctgcaacagcatttcaagaggttggacaggagctacttggttgctca
gcgcgagagctcaacatgtttaaagagaatgaagatcctcgctacacagctgtcttgatc
cattgcttgtatcagaattatttgttgaggctaaaagttaaagaagaacagtatggcgat
gaacgacgagtgaagaacactgtggtcaaggtggagagggtggatccttcggctgagagt
aaatttctgcttgattccatttcaaggtttatagtatga
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