Sorghum bicolor (sorghum): 8081948
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Entry
8081948 CDS
T01086
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8081948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8081948
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8081948
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
8081948
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
8081948
NCBI-ProteinID:
XP_002454664
UniProt:
A0A921R853
C5XTP2
LinkDB
All DBs
Position
4:complement(65533122..65543115)
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AA seq
614 aa
AA seq
DB search
MSGLLNSNLNSSASNLPDSAGRPFTASFSGQSGSIPGFHHSGLHNTHGSYNLPNMPGSLA
QRNAAMSGFPSSGVQQPGGSIPGRFPSNNLPVAMSQIPHAHSGVSGRGMNFGGGPAFSSS
MNIGGNIQGLSGGSRNSVPGISVSPSLGNSGPRITSSVGNIVSGSSIGRNISTGGLSVPS
IASRMNLSGNAGSGSLNVQGSSRMMNGLLHQQASPQLINMLGSSYPTSGGSLSQNQIQAG
NNSLSSMGMLHDPSDTAPFDINDFPQLSGRPNSAGGPQGQYGSLRKQGVGVNTIVQQNQE
FSIQNEDFPALPGYKGNPSDYNTMELHHKEQLHENVPVMQSQQYPMARSGFNLGSSYLPN
RQQHQQGAKSVQNAGSHNILLRPPSQTSSLGSYDQFLPQYQQPQPQNHFRFQQMSSAAHS
YRDQIQKIQAGPTPPDPYGLLGLLGVIRMNDADLASLALGIDLTTLGLNLNSPDNLYKTF
GSPWSNDPAKGDTDFHIPACYFSEQTPPLQPLLFQKFHILILFYIFYSMPKDEAQLYAAN
ELYNRGWFYHKEVRLWFTRTANVEPLVKTHLYERGSYLCFDPEIWDSVRKDNFVLHYELV
EKRPALPSIAQNVR
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcttgctgaattcaaaccttaatagttcagcatcaaatcttccagactcagct
ggaaggccatttacagcatccttttcgggtcaatctggatcaattccaggtttccatcat
tctggcttgcataacactcatggaagttacaaccttccaaatatgcctggatcacttgca
caaaggaatgctgccatgagtggctttccgtcctctggggttcaacaacctggaggtagc
attcctgggagattcccttcaaacaaccttccggttgccatgtctcagattcctcatgca
cattcaggtgtcagtggtagagggatgaattttggcggaggtccggcatttagtagcagc
atgaatattggtggtaacatccaaggcttatccggtggtagtcgcaattctgttcctggg
atatcagtatctccatctttaggaaactcgggtccacggatcacaagttctgtaggaaat
attgtaagtggaagcagtattggaagaaatataagcactggtggtttgtccgtgccaagt
attgcatcacggatgaatctgagtggtaatgctgggagtggtagtctgaatgtgcaagga
tccagtcgaatgatgaatggcttgcttcatcaacaagcatctcctcagttgataaatatg
cttgggagttcatatccaacatctggaggttcattatcacagaaccaaattcaagcagga
aataattctcttagttctatggggatgttgcatgatcccagtgacactgctccatttgac
ataaatgattttccccaattgtctggtcggcctaattctgctggtggtccacaaggacaa
tatgggtcactgcgcaagcaaggagttggtgttaacaccattgtgcaacaaaaccaggaa
ttcagcattcaaaatgaagacttcccagctttgcctgggtataaaggtaacccttcagat
tataatactatggagttgcatcataaggaacaactccacgagaatgtacctgtaatgcaa
tcgcagcagtatcctatggcaaggtcaggctttaacttaggaagtagctacctacctaat
cgtcaacaacaccagcaaggtgctaagtcagtccagaatgctggatcccacaatatttta
ctgagaccacccagtcaaacttctagtttgggatcatatgatcaatttctgccgcaatac
cagcagccgcagcctcaaaatcatttcaggtttcagcagatgtcttctgctgcacattca
tatcgggatcagattcaaaagattcaggcgggaccgacaccacctgatccatatggcttg
ttaggattgctgggagttataagaatgaatgatgctgatttagcatctcttgctttagga
atagatctgacaacattgggtttgaacttgaactcaccagataatctatacaagacattt
ggctctccctggtcgaatgacccagcaaaaggagatactgattttcatattccagcttgt
tacttctctgagcaaactccaccgctacagcccttactttttcagaagtttcacatacta
atactattttacatcttctatagcatgccaaaggatgaagctcagctgtatgctgccaat
gaactgtataatcggggatggttttaccataaagaagtgcgcttatggttcacaagaact
gcaaatgtggaacctctagtcaaaacacacctctatgaacgtggatcttacctttgcttt
gacccagagatctgggattcagtccgtaaggacaactttgttctccactatgagctggta
gagaaaaggccagccctgccttcaatagcacaaaacgttagatga
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