KEGG   Sorghum bicolor (sorghum): 8082354
Entry
8082354           CDS       T01086                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
sbi  Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:sbi04812]
    8082354
Cytoskeleton proteins [BR:sbi04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     8082354
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 Katanin_con80 WD40_CDC20-Fz WD40_WDHD1_1st EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_SCAP Beta-prop_TEP1_C WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_IFT122_1st WDR90_beta-prop_4th eIF2A Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_VPS8 Beta-prop_Vps41 Beta-prop_IP5PC_F Beta-prop_DCAF12 Beta-prop_LRRK2 WD_LRWD1 PROPPIN
Other DBs
NCBI-GeneID: 8082354
NCBI-ProteinID: XP_021310961
LinkDB
Position
3:64451826..64460785
AA seq 832 aa
MDPEKRGYELQNFVAHDAEVRSLSIGKKSSRVFITGGNDRKVNLWAIGKQTPLLTLSGHT
SAVEAVQFDSAEVLVLAGSSNGSIKLWDLEEAKVVRSLAGHRSSCTAVEFHPFGEFFASG
SSDTDLKIWDIKKKGCIHTYKGHRGAIKTIRFTPDGRWVVTGGEDSIVKVWDLTAGKLLH
DFKFHSGQINCIDFHPQEFLLATGSADRTVKFWDLETFELIGSSGPEGTSVRSMVFHPDG
KTLFCGLDQSLKVFSWEPVRCHDVVDMGWSNLADLSIYEGKLLGCSYHERRVGLWAADIS
LIGPYALGVLPKANFFAELVQSMDDNPVKPVDSTANSRPALAMAHSKSSYKVKESGIAES
RVRGSHLTPATTDKVKKARSSTIPRRPDSSLKSSVQGSTPVRRMKLVDSPSTNPKIMERN
FGQRDISSASRAARANNSATAKKSNLTESALVKDIYTTSQAVPAPVVVPRDILEDKTVSN
VRRGTGDTAAAPDDFRTPFHKRKPSLSGSAADSDSSSVYTEPDVCSEGLSSLKFSFGLTP
YYKKEEFGDVDNEGIAQITEKMDRTVLLDHSPQLNDDKSFESPCSTTETAKVKYVRGVAV
PLGKTKSLVERWEKRESSSTDYSPQIGSCGDRASRNDNPPSHLAEPSTTYEKDLSTVDEV
MVPVNLVRNHDEFINAVKLRLTKLEMMRHVFEQSGIKGAIAAVAKLPDNAVQADVVSALK
GKLDLFNLEIFSSFLPVLSGLLCSKTERHATVSLEMLLDLIKIFGPVIHSTLSANLGVGV
NIQAEQRLQRCTRCFNHLQKIQQTLNPLIMRGGQAAQLAQELNLSLQDLVVI
NT seq 2499 nt   +upstreamnt  +downstreamnt
atggaccccgagaagcgcggctacgagctccagaattttgtggcgcacgatgctgaagtt
aggtccctgtccattggcaagaagtctagccgtgtgttcatcactggcggtaatgatcgc
aaggtcaacctgtgggcaattggcaagcaaacaccacttctgaccttgtctggccacaca
agtgcggtggaggctgtgcagtttgattcagcagaggtgcttgtgcttgctggctcatct
aatggttccatcaagctctgggacttggaggaagctaaagttgtgcggtctctcgctggg
cacagatcgagttgcactgctgttgaattccatccatttggcgagttttttgcatctggt
tcgtcagatacagacctgaagatatgggacataaagaaaaaaggatgtatacacacatat
aagggtcacagaggagcaattaaaacaatcagatttacccctgatggacgatgggttgtc
actggaggagaagatagcattgtgaaggtgtgggatttgacagctggaaagcttctacat
gatttcaagtttcacagtggacaaatcaactgtattgattttcaccctcaagaatttttg
cttgcaacaggctctgctgataggacggtgaaattttgggatcttgaaacttttgaattg
ataggttcttctggacctgagggtaccagtgtacgttctatggtctttcacccagatggt
aaaacccttttctgtggattagaccaaagcttaaaggtattctcttgggaaccagtaagg
tgccatgatgttgttgacatggggtggagtaatttagctgaccttagtatttatgaaggg
aaactcttgggatgctcctaccatgaacgccgtgttggtctatgggctgctgatatatca
ctcattggaccctatgctcttggtgtgttgcccaaagcaaatttttttgctgagcttgtg
cagtctatggatgataaccctgtgaaaccagttgatagcactgcaaattctcgtcctgct
ttagcaatggcacattcaaaaagttcatacaaagtcaaggaatctgggattgctgaaagc
agggttcgtggttcacatttgactccagcaactacagataaggtcaagaaagctaggagc
agtactattccacgaagacctgattcgtctttaaaatcatctgttcagggttccaccccg
gtgaggcgtatgaagcttgttgatagtccttccaccaacccaaaaatcatggaacgtaat
tttggacagagagacatttcatcagcatctcgtgcagcgagagctaataattctgcaact
gctaagaaaagcaatcttacagaatcagctttagtgaaagatatttacactacatctcag
gctgttcctgcacctgttgttgtgcccagagacattttagaggacaaaacagtaagcaat
gttcgtagagggactggagacacagctgcagccccagatgattttcggaccccttttcac
aaaagaaaaccctcacttagtggcagtgctgctgatagtgatagctcatcagtatacact
gaacctgatgtttgctcagagggtttgtctagcttaaaattctcctttgggctaactcca
tattacaagaaagaagaatttggggatgtggataatgaaggtattgcacaaataacagaa
aagatggacagaacagtgttgctggaccattctccacagttaaatgatgataaatccttt
gaatctccatgctcaacaacagagactgccaaggtcaaatatgttagaggagttgctgtg
ccactggggaaaacaaagtctcttgttgagagatgggaaaagagagagtcttctagcact
gattattcaccacaaattggttcttgtggtgatcgggcatcaagaaatgacaaccctccg
tcccatctggcagaaccaagtacaacatatgaaaaggatctgtcaacagtggatgaggtg
atggttcctgtcaatttagtacggaaccatgatgaattcataaatgctgtaaaacttcgg
ttgacaaagctagagatgatgcggcacgtctttgaacaaagtggtatcaaaggagcaatt
gctgcagtggcaaagctacctgacaatgctgttcaagctgatgttgttagtgctctcaaa
gggaagcttgatcttttcaacctggaaattttctcaagctttctgcctgttctttccggg
ttactgtgtagcaagactgaaaggcatgctacagtttctttggaaatgttattggatctt
ataaagatttttggaccagtaattcattcaacattatcagcaaatttaggcgttggagtt
aacattcaggctgagcagaggttgcaacgttgcacacggtgctttaaccatctgcaaaag
attcaacaaactttgaatccattgattatgcggggtggtcaagctgcacaacttgctcaa
gaactaaatctttcattgcaagatttggtggtgatctag

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