Sorghum bicolor (sorghum): 8082555
Help
Entry
8082555 CDS
T01086
Name
(RefSeq) peptidyl-prolyl cis-trans isomerase ssp-1
KO
K09578
peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:
5.2.1.8
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
8082555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8082555
03110 Chaperones and folding catalysts [BR:
sbi03110
]
8082555
Enzymes [BR:
sbi01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.8 peptidylprolyl isomerase
8082555
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
8082555
Chaperones and folding catalysts [BR:
sbi03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Parvulin
8082555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rotamase
Rotamase_3
Rotamase_2
Motif
Other DBs
NCBI-GeneID:
8082555
NCBI-ProteinID:
XP_002448709
UniProt:
C5Y9Y9
LinkDB
All DBs
Position
6:complement(59255515..59259531)
Genome browser
AA seq
281 aa
AA seq
DB search
MTYNKVATVIRAKRPSAEVHDQALLRFIQEYLRKHVRVKGLNGLIQSGPIAHGYRHRCCI
YTTCCQAQLPIPLQPKTTNQPKAFLAACRGGGATRAAKIGSDSPAADGVGDAARKRPSGG
DGPTPAPADKRRRPEHPSSSSAGSRDRHQAHHHQPHGRRPPSSSAEEKVRASHILIKHEG
SRRKASWRDPEGVAISATTRDDAADLVRALRDQIVSGDRKFEDIAAENSDCSSAKRGGDL
GSFGRGKMQKAFEKAAFALKVGEISDVVDTESGVHIIKRTG
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atgacgtacaacaaggtagccacagttattagggcaaaaagaccatcggctgaagttcac
gaccaggcgctcctccgatttattcaagaatatttgcgtaaacacgttagagtaaaaggt
ctgaatggcctaatccaatccgggccgatcgcccatggctaccgccaccgctgctgcata
tataccacatgctgccaggcccagctgcccattcccctgcagcccaaaactaccaaccaa
cccaaagctttcttggctgcctgccgcggcgggggcgcaacccgggccgccaagataggg
tcggacagccccgccgccgacggcgtcggcgacgccgcgcgcaagcggcccagcggcggc
gatggccccaccccggcgcccgccgacaagcgccgccgcccggagcacccctcctcctct
tccgcgggctcccgcgaccgccaccaggcccaccaccaccaaccccacggccgccgtccg
ccgtcgtcctcggccgaggagaaggtgcgcgcctcccacatcctgatcaagcacgagggc
tcccgccgcaaggcctcgtggcgggatcccgaaggcgtcgccatctcagccacgacccgc
gacgacgcggccgacctcgtgcgcgcgctccgcgaccagatcgtctccggggaccgcaag
ttcgaggacatcgccgccgagaactccgactgcagctcggccaagcgcggcggtgacctc
ggttcatttgggaggggtaagatgcagaaggcttttgagaaggctgcgtttgctctgaag
gtgggggagataagtgacgtagttgatacagaaagcggggtgcacatcatcaagaggact
ggctga
DBGET
integrated database retrieval system
