KEGG   Sorghum bicolor (sorghum): 8082648
Entry
8082648           CDS       T01086                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    8082648
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sbi03041]
    8082648
Spliceosome [BR:sbi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    8082648
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st EIF3I WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_TEP1_C NBCH_WD40 ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_DCAF4 WDR90_beta-prop_4th PRP4 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_Vps41 WD_LRWD1 Beta-prop_WDR75_2nd eIF2A Beta-prop_Nup120_160 Beta-prop_SCAP Beta-prop_NWD2_C WD40_like Beta-prop_NUP159_NUP214 LCE
Other DBs
NCBI-GeneID: 8082648
NCBI-ProteinID: XP_002467852
UniProt: C5WZR9 A0A921V2R8
LinkDB
Position
1:complement(65858878..65862697)
AA seq 520 aa
MENPRPQPPAPTPPMAPLPVHPPIAPIPVPPPRAPAAAASMASTSTSSAGGGGEAEYELS
DDHRAARERHERAVQELLQRRRAYAMAVPTNDSAVRARLRRLGEPITLFGEREMERRDRL
RALMVRLEADGQVDRLLRAQEDDQAARAGEEEEEEEQIQYPFFTEGTQELLKARVDIAQY
SLPRAKARIERAKRRHEDPDEDPEAEAELVVKQAGEFVLECSEIGDDRPLTGCSFSRDAS
MLATSSWSGIIKVWSMPQITKVATLKGHTERATDVAFSPADDCLATASADRTAKLWKPDG
SLLMSFDGHLDRLARLAFHPSGKYLGTASFDKTWRLWDINTGKELLLQEGHSRSVYGVSF
HPDGSLAASCGLDAYARVWDLRSGRLFFALKGHVKPVLGVSFSPNGYLVATGSEDNFCRI
WDLRKKQMLYSIPAHKSLISHVKFEPQEGYYLVTSSYDTKAALWSARDYKPINSLVGHES
KVTSLDISGDGQKIVTVSHDRTIKIWSCRSSTQDNAMELD
NT seq 1563 nt   +upstreamnt  +downstreamnt
atggagaaccccaggccccagcccccggcccccactcctcccatggctccgcttcccgtc
cacccgccaatcgctcccatccccgtccctccgccccgcgcgcccgccgccgctgcttcc
atggcctccacctccacttcctccgccgggggcggaggcgaggccgagtacgagctctcc
gacgaccaccgcgccgcgcgggagcgccacgagcgcgcggtgcaggagctcctccagcgg
cgccgcgcctacgccatggccgtgcccaccaacgactccgccgtgcgggcccgcctccgc
cgcctcggcgagcccatcacgctattcggcgagcgcgagatggagcgccgcgaccgcctc
cgagccctcatggtccggctcgaggccgatggccaggtcgaccgtctcctccgcgcgcag
gaggacgaccaggccgcgcgcgccggcgaggaggaggaggaggaggagcagatccagtac
cccttcttcaccgagggcacgcaggagcttcttaaggcgcgtgtcgacattgcacagtac
tcgctcccccgtgccaaggccaggatcgagagggccaagcgccgccacgaggatcccgat
gaggacccagaggcggaggccgaactcgtcgtgaagcaggctggggagtttgtcctggag
tgcagcgagattggagatgatcgccctctcaccggctgttccttctctcgtgatgcatca
atgctggccacaagttcctggagtggaataatcaaagtatggagcatgccacaaataacc
aaggtcgcaaccctgaaaggtcacacagaacgtgcaactgatgttgccttctctcctgct
gatgactgcttagcaacagcttcagctgatagaactgcaaaattatggaaaccagatggg
tcacttttgatgtcttttgatggccaccttgatcgtcttgctcgccttgcttttcatcca
tctggaaagtaccttggtacagctagctttgacaagacttggagattgtgggacatcaat
actggaaaggagctgctactccaagaggggcacagcagaagtgtgtatggggttagcttt
caccctgatggttctttggcagcatcttgtggtcttgatgcatatgctcgagtatgggat
ctgagatcaggaagattgttctttgccctcaagggccatgtgaaacctgtcctaggagtc
agcttctctcctaatggttatctggttgcaactggaagtgaagacaatttctgtcgaata
tgggatttgaggaaaaagcaaatgttgtattctataccagctcataagagtcttatttca
catgtaaaatttgaacctcaagaagggtattatttagtgacttcttcctatgacaccaaa
gcagcactgtggtcagctcgggattacaaaccaatcaacagtttggtgggccacgagtca
aaggttactagtttggatattagtggagatggacagaagattgtgactgtgtcgcatgat
cgtacgataaaaatttggtcatgcagaagtagcacacaagataatgcaatggaattggat
tga

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