Sorghum bicolor (sorghum): 8082952
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Entry
8082952 CDS
T01086
Name
(RefSeq) probable histone deacetylase 19 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03082
ATP-dependent chromatin remodeling
sbi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
8082952
03083 Polycomb repressive complex
8082952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sbi03036
]
8082952
Enzymes [BR:
sbi01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
8082952
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
8082952
HDAC complexes
Sin3A-HDAC complex
8082952
BRAF-HDAC complex
8082952
REST complex
8082952
SHIP complex
8082952
MiDAC complex
8082952
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
8082952
Heterochromatin formation proteins
Other heterochromatin formation proteins
8082952
Chromatin remodeling factors
NuRD complex
8082952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
GT-C_AftD
Motif
Other DBs
NCBI-GeneID:
8082952
NCBI-ProteinID:
XP_002451765
UniProt:
A0A921R2T6
C5XY14
LinkDB
All DBs
Position
4:7759256..7763600
Genome browser
AA seq
517 aa
AA seq
DB search
MDPSSAGSGGNSLPSVGADGQKRRVCYFYDSDVGNYYYGQGHPMKPHRIRMTHSLLARYG
LLNQMQVYRPNPARDRDLCRFHADDYINFLRSVTPETQQDQIRLLKRFNVGEDCPVFDGL
YSFCQTYAGASVGGAVKLNHGHDIAINWSGGLHHAKKCEASGFCYVNDIVLAILELLKHH
ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVP
LDDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRY
MRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGQELEDKMPVNEYYEYFGPDYTLHVAP
SNMENKNTRNQLDDIRSKLLDNLSKLRHAPSVQFQERVPDTEVPEPDEDQDDPDERHDPD
SDMEVDDHKAVEESARRSIPGIKVKREFGENETKVQDGGRIASDHRGVEPMAEDIGSSKQ
APQADASAMAVDEPSNVKNEPESSTKLQDQAAAYHKP
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggacccgtcatcggcgggctccggcggcaactccctcccgtccgttggcgccgacggg
cagaagcggcgcgtgtgctacttctacgactcggatgtgggcaactactactacgggcag
ggccatccgatgaagccgcaccgcatccggatgacgcactcgctgctggcgcgctacggc
ctcctcaaccagatgcaggtgtaccgccccaacccggcccgcgaccgcgacctctgccgc
ttccacgccgacgactacatcaacttcctgcgctccgtcacgcccgagacgcagcaggac
cagatccgcctgctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctc
tacagcttctgccagacctacgcgggcgcctccgtcggcggggccgtcaagctcaaccac
ggccacgacatcgcaatcaactggtccggcggcctgcaccacgccaaaaagtgcgaggcg
tcgggcttctgctacgtcaacgacatcgtgctcgccatactcgagctgctcaagcatcac
gagagagttctgtatgtcgacatcgatatccaccatggggatggagtggaggaggctttc
tacacaacagacagggttatgacagtctcgttccacaagtttggggattatttcccagga
acaggggatatccgtgacattgggcactcaaaggggaagtactactccctgaatgtccct
ctggatgatgggattgatgatgaaagctaccagtctcttttcaagccaatcatgggcaaa
gttatggaggttttccgccctggtgcagttgtgcttcagtgtggtgctgattccttgtct
ggggataggttgggttgcttcaacctctcaatcagaggtcatgcggaatgtgttaggtac
atgaggtctttcaacgttccattgttgctccttggcggtggtggatataccataagaaat
gttgcacgctgttggtgttatgagacgggagttgctcttggccaagagcttgaagacaag
atgcctgtcaacgagtactatgaatacttcggtccagattacactcttcatgttgcacca
agtaacatggagaacaaaaatacacgaaaccaactggatgatataagatctaaacttctg
gataatctttcaaaacttcgacatgctcctagcgtccagtttcaagagagagttcctgac
accgaagtacctgagccagatgaagatcaagatgatccagatgaacggcatgatcctgac
tctgatatggaagtggatgatcacaaggctgtggaagagtcagcgaggaggagcattcca
ggtataaaagttaagagagaatttggtgaaaatgagaccaaagtgcaggatggtggcaga
attgcatctgaccatagaggagtggaacccatggcagaagacattggttcttccaagcaa
gctcctcaggcggatgccagtgcgatggctgttgatgagccaagcaatgttaagaatgaa
cctgagagctcaactaaattgcaagatcaagcagctgcataccacaagccataa
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