Sorghum bicolor (sorghum): 8082954
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Entry
8082954 CDS
T01086
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8082954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8082954
Enzymes [BR:
sbi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
8082954
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
8082954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
ATP_bind_1
AAA_22
ABC_tran
CbiA
SRPRB
AAA_10
AAA_29
AAA_24
MMR_HSR1
GTP_EFTU
Motif
Other DBs
NCBI-GeneID:
8082954
NCBI-ProteinID:
XP_002451771
UniProt:
C5XY22
A0A921UJQ1
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All DBs
Position
4:7864903..7869216
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AA seq
439 aa
AA seq
DB search
MAAATAAGAGAATPQPPRQYKLAPQSELRVEVLPDAPLRVRLVTGTAEIFGTELPPEGWV
PVPPRSKIAIFTWHGATVELDGVSESEYSSDETPMVIYVNTHAILDARRARARAAAAQGG
DMEASQGPRVIVVGPTDSGKSTLCKMLLSWAAKLGWKPTYVDLDIGQGSITIPGCISATP
IEKPIDIVDGIPLEMPLVYFYGHSSPSINADVYKVLMKELAKTLEKQFSGNAESRAAGMV
INTMGWVEGLGYELLLNAIETFKANVVLVLGQEKLWKMLKDAVQSKSNIDVVKLHKSEGV
VLRNTKYRQKTRSFRIREYFYGIANDLAPHSNIVNFSHVSVYKIGGGHQAPRSALPIGAE
PVADPTRLVAVNISTDMIHTVLAISYAKEPDEIISSNIAGFIHVTDVDIQRKKLTYIAPC
PGDLPSRLLIASSLTWYEA
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcgacagccgcgggggccggagctgcgaccccgcagccgccacggcagtac
aagctagctccgcagagcgagctgcgtgtggaggtgctccccgacgcgcccctccgagtg
cgcctcgtcaccggcacggcggagatcttcggcaccgagctgcccccggagggctgggtc
cccgtccctccccgatccaagatcgccattttcacctggcacggcgcgacggtggaactg
gatggggtgagcgagagcgagtactcgtctgacgagactccaatggtaatttacgtcaac
acgcacgccattctggatgcccgtagggcaagggcgagggctgctgcagctcaggggggc
gatatggaggcctcacagggacctagagtgattgttgtggggccaacagattccggaaaa
agtactctctgcaagatgctccttagctgggctgccaaactgggctggaagcctacatat
gtcgatttagatattggccaggggtctataacaatccctggatgtatttctgccacacca
attgagaaacctatagatatagttgatgggattcccttggaaatgccacttgtatacttc
tatggccactcaagtccaagtattaatgcggatgtttacaaagttcttatgaaggagcta
gctaaaacattggagaaacagttctctggcaatgctgaatctagggcagcaggaatggtt
atcaatacaatggggtgggttgaaggccttgggtatgagttacttcttaatgcaattgag
accttcaaggccaatgtagtactggtactgggacaggagaaactctggaagatgttaaaa
gatgcagttcaaagcaagtccaacattgatgttgtaaaacttcacaaatcagagggtgtt
gtcctcagaaatacaaaatatcggcaaaaaacgagaagcttccgaatcagggaatatttt
tatgggattgcaaatgatcttgcaccgcactcaaacattgtcaatttcagtcatgtctcg
gtgtacaaaatcggtggtggccatcaagctccccgttcagcattacctatcggtgcagag
cctgtggcagatcctactcgacttgttgctgtcaacatcagcacggatatgatccataca
gtgcttgccatttcctatgctaaggaacctgatgaaataatttctagcaatattgccgga
ttcattcatgttactgatgttgacatccaaaggaagaagctgacgtacattgcaccttgc
ccgggggacttaccaagcaggctgttgatcgcgagttcactgacatggtacgaagcctga
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